miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 52507 0.66 0.871458
Target:  5'- cGCAGGgacgacgcggcGGCCGcgcgcgccguGCugGCGacGGGGCu -3'
miRNA:   3'- aCGUCC-----------UCGGCuuu-------UGugCGU--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 22559 0.66 0.870721
Target:  5'- cGCGGaGAGgCGAAAagacacaggcacacGCACGCAccgcacGGGGg -3'
miRNA:   3'- aCGUC-CUCgGCUUU--------------UGUGCGU------CCCCg -5'
5493 5' -56.2 NC_001798.1 + 147023 0.67 0.865501
Target:  5'- gGCGGGccggggcuuGGCCGccGAggUGCGCcccggccggAGGGGCc -3'
miRNA:   3'- aCGUCC---------UCGGC--UUuuGUGCG---------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 36899 0.67 0.865501
Target:  5'- aUGCAGGcuucugAGCCGcGAAUccccacaugGCGuUGGGGGCu -3'
miRNA:   3'- -ACGUCC------UCGGCuUUUG---------UGC-GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 43689 0.67 0.865501
Target:  5'- gGguGGucacGGcCCGGAGAUGCGUggccaggcgcgGGGGGCu -3'
miRNA:   3'- aCguCC----UC-GGCUUUUGUGCG-----------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 56401 0.67 0.865501
Target:  5'- cGguGGGGUCc----CGCgGCGGGGGCu -3'
miRNA:   3'- aCguCCUCGGcuuuuGUG-CGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 83572 0.67 0.865501
Target:  5'- gUGCuGGGGCgGuGAAAC-UGC-GGGGCg -3'
miRNA:   3'- -ACGuCCUCGgC-UUUUGuGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 3271 0.67 0.860943
Target:  5'- gGCGGGcaccgcgcgcucgucGGCCGgcGACGCcgccgccgacgGCAacGGGGCg -3'
miRNA:   3'- aCGUCC---------------UCGGCuuUUGUG-----------CGU--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 39225 0.67 0.857864
Target:  5'- gGguGGccAGCaCGGGAGC-C-CAGGGGCu -3'
miRNA:   3'- aCguCC--UCG-GCUUUUGuGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 78562 0.67 0.857864
Target:  5'- cUGCGGGAggcGCUGGccGCGCGCGagcgccGGGCc -3'
miRNA:   3'- -ACGUCCU---CGGCUuuUGUGCGUc-----CCCG- -5'
5493 5' -56.2 NC_001798.1 + 102042 0.67 0.857864
Target:  5'- gGCGGGGGucuCCGugucuGCGUGGGGGUg -3'
miRNA:   3'- aCGUCCUC---GGCuuuugUGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 64141 0.67 0.857864
Target:  5'- --aGGGGGUCGGu-GCuCGCGGGGGa -3'
miRNA:   3'- acgUCCUCGGCUuuUGuGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 71558 0.67 0.857864
Target:  5'- -cCAGGGcGCCagcGAGcACACGCAcGGGCg -3'
miRNA:   3'- acGUCCU-CGG---CUUuUGUGCGUcCCCG- -5'
5493 5' -56.2 NC_001798.1 + 148067 0.67 0.857864
Target:  5'- gUGguGGcGGaaGGAAACGgGcCGGGGGCc -3'
miRNA:   3'- -ACguCC-UCggCUUUUGUgC-GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 51613 0.67 0.857864
Target:  5'- cGCGuucGGGCUGuc-GCGCGUGGGGGUc -3'
miRNA:   3'- aCGUc--CUCGGCuuuUGUGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 153087 0.67 0.854751
Target:  5'- gGCGGGGcggcGCCGGGcccucgcggauauAUACGC-GGGGCu -3'
miRNA:   3'- aCGUCCU----CGGCUUu------------UGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 47671 0.67 0.850021
Target:  5'- cGCGGcGcuGGcCCGAugcGCGCGCgcccgAGGGGCg -3'
miRNA:   3'- aCGUC-C--UC-GGCUuu-UGUGCG-----UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 56515 0.67 0.850021
Target:  5'- gGguGGAGCgGAucGugGCGguGccgGGGCg -3'
miRNA:   3'- aCguCCUCGgCUu-UugUGCguC---CCCG- -5'
5493 5' -56.2 NC_001798.1 + 152183 0.67 0.850021
Target:  5'- aGgGGGGGCCuGAGAC-C-CGGGGGUc -3'
miRNA:   3'- aCgUCCUCGGcUUUUGuGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 121073 0.67 0.850021
Target:  5'- cGCGGGccCCGAGGACGCGCAcacGCa -3'
miRNA:   3'- aCGUCCucGGCUUUUGUGCGUcccCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.