miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 26013 0.66 0.880134
Target:  5'- gUGUucGGGCCGggGgucuucGCGCGCGuGGaGGCc -3'
miRNA:   3'- -ACGucCUCGGCuuU------UGUGCGU-CC-CCG- -5'
5493 5' -56.2 NC_001798.1 + 3464 0.66 0.880134
Target:  5'- aGCAGGaAGCCcuucuGCGCGCGGucguagcGGCg -3'
miRNA:   3'- aCGUCC-UCGGcuuu-UGUGCGUCc------CCG- -5'
5493 5' -56.2 NC_001798.1 + 4722 0.66 0.880134
Target:  5'- gGCAGGcucGUCGAcgGCcuccccggACGCcGGGGCc -3'
miRNA:   3'- aCGUCCu--CGGCUuuUG--------UGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 16136 0.66 0.880134
Target:  5'- --uGGGGGCgGAAuaccAUAC-CGGGGGCa -3'
miRNA:   3'- acgUCCUCGgCUUu---UGUGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 34839 0.66 0.880134
Target:  5'- gGCccGGGCCGGAccgcCGgGCGGGGGa -3'
miRNA:   3'- aCGucCUCGGCUUuu--GUgCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 96044 0.66 0.880134
Target:  5'- gGCGGGcgacgGGCauaaaGAGGGgAUGuCAGGGGCc -3'
miRNA:   3'- aCGUCC-----UCGg----CUUUUgUGC-GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 113308 0.66 0.880134
Target:  5'- cGCuGGAGCUGGugGC-CGC--GGGCa -3'
miRNA:   3'- aCGuCCUCGGCUuuUGuGCGucCCCG- -5'
5493 5' -56.2 NC_001798.1 + 66785 0.66 0.880134
Target:  5'- cGCGgaaucGGAGUCGGccGACGCGCGcGGGUc -3'
miRNA:   3'- aCGU-----CCUCGGCUu-UUGUGCGUcCCCG- -5'
5493 5' -56.2 NC_001798.1 + 108657 0.66 0.880134
Target:  5'- gGCAcccGGAcgGCCGAcgcAACGCGCcgcccccGGGGCc -3'
miRNA:   3'- aCGU---CCU--CGGCUu--UUGUGCGu------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 134346 0.66 0.880134
Target:  5'- cGUGaGGGUCGAAAGgGCGUcguGGGGCc -3'
miRNA:   3'- aCGUcCUCGGCUUUUgUGCGu--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 54577 0.66 0.879424
Target:  5'- cGCcGGccGGCCGGccacguauuACACGCAuauggccGGGGCg -3'
miRNA:   3'- aCGuCC--UCGGCUuu-------UGUGCGU-------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 58373 0.66 0.877995
Target:  5'- gGCAGGAccgggccugacggaGCCGcgucAGACccucgcgcgGCGCAGGcGGCc -3'
miRNA:   3'- aCGUCCU--------------CGGCu---UUUG---------UGCGUCC-CCG- -5'
5493 5' -56.2 NC_001798.1 + 91090 0.66 0.873657
Target:  5'- cGgAGGcGGCCGucguGGACcccggugcgcugcucCGCGGGGGCg -3'
miRNA:   3'- aCgUCC-UCGGCu---UUUGu--------------GCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 76736 0.66 0.872926
Target:  5'- cGCccuGGAGgCGAugcucaacGACGCGCGGGaGCg -3'
miRNA:   3'- aCGu--CCUCgGCUu-------UUGUGCGUCCcCG- -5'
5493 5' -56.2 NC_001798.1 + 39558 0.66 0.872926
Target:  5'- cGCcGGGGCCGuccgucCGCGCcgacgcGGGGUg -3'
miRNA:   3'- aCGuCCUCGGCuuuu--GUGCGu-----CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 139525 0.66 0.872926
Target:  5'- aGCAGcAGCuCGAcguCACGCAGGuGCc -3'
miRNA:   3'- aCGUCcUCG-GCUuuuGUGCGUCCcCG- -5'
5493 5' -56.2 NC_001798.1 + 130621 0.66 0.872926
Target:  5'- aGCAGGGcgaacagcGUCGucaggcagauGAGCAUGCucGGGGCg -3'
miRNA:   3'- aCGUCCU--------CGGCu---------UUUGUGCGu-CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 77355 0.66 0.872926
Target:  5'- gGCuGGccCUGGAGGCGCG-GGGGGCc -3'
miRNA:   3'- aCGuCCucGGCUUUUGUGCgUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 32949 0.66 0.872926
Target:  5'- aGUGGGGGUgGGAGugGgGgGGGGGg -3'
miRNA:   3'- aCGUCCUCGgCUUUugUgCgUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 1582 0.66 0.872193
Target:  5'- gUGUcGGGGCCGAAGcgcgugcGCACGCGGuaccGCa -3'
miRNA:   3'- -ACGuCCUCGGCUUU-------UGUGCGUCcc--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.