miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 24185 0.66 0.89388
Target:  5'- gGCuGGGGCCuGGcGCACGUGGcGGCc -3'
miRNA:   3'- aCGuCCUCGGcUUuUGUGCGUCcCCG- -5'
5493 5' -56.2 NC_001798.1 + 38199 0.66 0.89388
Target:  5'- aGCAGGAGgCGcgGACuaaauaacuccGCGCGGccaGGCa -3'
miRNA:   3'- aCGUCCUCgGCuuUUG-----------UGCGUCc--CCG- -5'
5493 5' -56.2 NC_001798.1 + 133866 0.66 0.89388
Target:  5'- aUGCAGGGGgCGGuGAACuuuaGCAcccuauaagucuGGGGCc -3'
miRNA:   3'- -ACGUCCUCgGCU-UUUGug--CGU------------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 146457 0.66 0.89388
Target:  5'- cGCGGccgcAGCCGAGcAGCGcCGCGggcuccGGGGCc -3'
miRNA:   3'- aCGUCc---UCGGCUU-UUGU-GCGU------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 9839 0.66 0.89388
Target:  5'- gGUAGaGGCCGGcguGCugGgGGGaGGCg -3'
miRNA:   3'- aCGUCcUCGGCUuu-UGugCgUCC-CCG- -5'
5493 5' -56.2 NC_001798.1 + 145785 0.66 0.89388
Target:  5'- ---cGGGGUCcacacaGGAGCGCGCGGGcGGCa -3'
miRNA:   3'- acguCCUCGGc-----UUUUGUGCGUCC-CCG- -5'
5493 5' -56.2 NC_001798.1 + 85971 0.66 0.89388
Target:  5'- cGCaacgGGGAGuUCGAGGccGC-CGCcGGGGCg -3'
miRNA:   3'- aCG----UCCUC-GGCUUU--UGuGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 69182 0.66 0.887121
Target:  5'- gGCGGGccaGGUgGggGAgGuCGguGGGGUg -3'
miRNA:   3'- aCGUCC---UCGgCuuUUgU-GCguCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 144558 0.66 0.887121
Target:  5'- gUGgGGGGGCguucgaaagggCGAGGACGgGCggcuggguggcgAGGGGCu -3'
miRNA:   3'- -ACgUCCUCG-----------GCUUUUGUgCG------------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 25645 0.66 0.887121
Target:  5'- cGCGGcGGGCUGuccugccuGCugGCGGcccuGGGCa -3'
miRNA:   3'- aCGUC-CUCGGCuuu-----UGugCGUC----CCCG- -5'
5493 5' -56.2 NC_001798.1 + 40197 0.66 0.887121
Target:  5'- --gAGGAGCgGcaccGACGCGCAaccGGGGUc -3'
miRNA:   3'- acgUCCUCGgCuu--UUGUGCGU---CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 40818 0.66 0.887121
Target:  5'- cGCccccuGGGGGCCGcugguucCGCGUuuuuGGGGGCc -3'
miRNA:   3'- aCG-----UCCUCGGCuuuu---GUGCG----UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 141463 0.66 0.887121
Target:  5'- gGCuGcGAGCUGcuGACcggcucgccGCGCGGGGGg -3'
miRNA:   3'- aCGuC-CUCGGCuuUUG---------UGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 154064 0.66 0.887121
Target:  5'- gGCuGGAgcGCCGggGcGCggcacggcuggaGCGCcGGGGCg -3'
miRNA:   3'- aCGuCCU--CGGCuuU-UG------------UGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 31788 0.66 0.886432
Target:  5'- cGCGGGucgggagGGCCGG--GCGCGgAGGGa- -3'
miRNA:   3'- aCGUCC-------UCGGCUuuUGUGCgUCCCcg -5'
5493 5' -56.2 NC_001798.1 + 11663 0.66 0.886432
Target:  5'- gGCGGGGGUCGGgucucggGGGgAgGaCGGGGGUg -3'
miRNA:   3'- aCGUCCUCGGCU-------UUUgUgC-GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 36451 0.66 0.880843
Target:  5'- gGCGGGGaaggaaggaaagaccCCGGAAGCGCcgggaGGGGGCg -3'
miRNA:   3'- aCGUCCUc--------------GGCUUUUGUGcg---UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 108657 0.66 0.880134
Target:  5'- gGCAcccGGAcgGCCGAcgcAACGCGCcgcccccGGGGCc -3'
miRNA:   3'- aCGU---CCU--CGGCUu--UUGUGCGu------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 66785 0.66 0.880134
Target:  5'- cGCGgaaucGGAGUCGGccGACGCGCGcGGGUc -3'
miRNA:   3'- aCGU-----CCUCGGCUu-UUGUGCGUcCCCG- -5'
5493 5' -56.2 NC_001798.1 + 113308 0.66 0.880134
Target:  5'- cGCuGGAGCUGGugGC-CGC--GGGCa -3'
miRNA:   3'- aCGuCCUCGGCUuuUGuGCGucCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.