miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 4409 0.7 0.661274
Target:  5'- gGCGGGGcGCCGggGgucgcggcgacagGCugGCcauGGGGUc -3'
miRNA:   3'- aCGUCCU-CGGCuuU-------------UGugCGu--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 4597 0.66 0.898475
Target:  5'- gGCgAGcGGGCCGcuucuucuuGCGCGCcgucgcgcuccgggGGGGGCg -3'
miRNA:   3'- aCG-UC-CUCGGCuuu------UGUGCG--------------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 4722 0.66 0.880134
Target:  5'- gGCAGGcucGUCGAcgGCcuccccggACGCcGGGGCc -3'
miRNA:   3'- aCGUCCu--CGGCUuuUG--------UGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 5896 0.66 0.899767
Target:  5'- cGCGGGcuCCGccccGAGGCGgGCccggacgGGGGGCg -3'
miRNA:   3'- aCGUCCucGGC----UUUUGUgCG-------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 5999 0.66 0.900409
Target:  5'- cGCGgcGGAGaCCGGGAcggcagcggcgGCAuCGCgaaGGGGGCc -3'
miRNA:   3'- aCGU--CCUC-GGCUUU-----------UGU-GCG---UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 6228 0.72 0.570193
Target:  5'- --gGGGGGCCGGccggggGGACGgGCGGGGGa -3'
miRNA:   3'- acgUCCUCGGCU------UUUGUgCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 6350 0.68 0.816734
Target:  5'- gGgGGGAcggGCCGGggGGACGgGCcgGGGGGCc -3'
miRNA:   3'- aCgUCCU---CGGCU--UUUGUgCG--UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 6396 0.71 0.641792
Target:  5'- gGCcgGGGGGCCGggGGgACGgGGGGa- -3'
miRNA:   3'- aCG--UCCUCGGCuuUUgUGCgUCCCcg -5'
5493 5' -56.2 NC_001798.1 + 7800 0.66 0.900409
Target:  5'- gGCGGGAGCCaGGgucggacaGGAgGCGCAGcuGGUu -3'
miRNA:   3'- aCGUCCUCGG-CU--------UUUgUGCGUCc-CCG- -5'
5493 5' -56.2 NC_001798.1 + 8873 0.69 0.771398
Target:  5'- cGC-GGAcGCgGAAGggcGCugGCGGaGGGCg -3'
miRNA:   3'- aCGuCCU-CGgCUUU---UGugCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 9118 0.71 0.618178
Target:  5'- cGgGGGAGCCGccgcgagguggucuGcgGCACGCGGGcgcGGCg -3'
miRNA:   3'- aCgUCCUCGGC--------------UuuUGUGCGUCC---CCG- -5'
5493 5' -56.2 NC_001798.1 + 9655 0.75 0.391552
Target:  5'- cGCAGcGGGCC----GCGCGCGGaGGGCg -3'
miRNA:   3'- aCGUC-CUCGGcuuuUGUGCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 9839 0.66 0.89388
Target:  5'- gGUAGaGGCCGGcguGCugGgGGGaGGCg -3'
miRNA:   3'- aCGUCcUCGGCUuu-UGugCgUCC-CCG- -5'
5493 5' -56.2 NC_001798.1 + 10289 0.67 0.833746
Target:  5'- cGgGGGGGCgaCGggGGgACGaCGGGGGg -3'
miRNA:   3'- aCgUCCUCG--GCuuUUgUGC-GUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 10384 0.71 0.652053
Target:  5'- cGuCGGGGGUCGggGucgGCaCAGGGGCg -3'
miRNA:   3'- aC-GUCCUCGGCuuUug-UGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 10701 0.77 0.335458
Target:  5'- cGCAGGGGaCCGcAGGCAUcCAGGGGUu -3'
miRNA:   3'- aCGUCCUC-GGCuUUUGUGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 10903 0.72 0.550027
Target:  5'- gGCAGGAGCCGu---CG-GUcGGGGCa -3'
miRNA:   3'- aCGUCCUCGGCuuuuGUgCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 11425 0.72 0.590535
Target:  5'- cGCAGGAaacgcccCCGggGuuguaaaucugGC-CGCGGGGGCg -3'
miRNA:   3'- aCGUCCUc------GGCuuU-----------UGuGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 11663 0.66 0.886432
Target:  5'- gGCGGGGGUCGGgucucggGGGgAgGaCGGGGGUg -3'
miRNA:   3'- aCGUCCUCGGCU-------UUUgUgC-GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 11758 0.67 0.837062
Target:  5'- gGCGcGGGGCCGAAAAgGgaagcugcgccggauCGCAGGaGCc -3'
miRNA:   3'- aCGU-CCUCGGCUUUUgU---------------GCGUCCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.