miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 55 0.73 0.530087
Target:  5'- gGgGGGGGCgCGAAGGCGgGCGGcGGCg -3'
miRNA:   3'- aCgUCCUCG-GCUUUUGUgCGUCcCCG- -5'
5493 5' -56.2 NC_001798.1 + 151 0.69 0.718964
Target:  5'- cGCGGGcGCCGccccuccccccGCGCGCcgcGGGGCu -3'
miRNA:   3'- aCGUCCuCGGCuuu--------UGUGCGu--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 1248 0.7 0.676596
Target:  5'- cUGCGGGGGCgGGcccgcGuccgcgucgucgcgcAGCACcaGCGGGGGCg -3'
miRNA:   3'- -ACGUCCUCGgCU-----U---------------UUGUG--CGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 1582 0.66 0.872193
Target:  5'- gUGUcGGGGCCGAAGcgcgugcGCACGCGGuaccGCa -3'
miRNA:   3'- -ACGuCCUCGGCUUU-------UGUGCGUCcc--CG- -5'
5493 5' -56.2 NC_001798.1 + 2217 0.84 0.125229
Target:  5'- cGCAGcGGGCCcGAGGCGCGCAGcGGGCc -3'
miRNA:   3'- aCGUC-CUCGGcUUUUGUGCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 2310 0.66 0.880134
Target:  5'- cGCGGGucgaacaugagGGCCGGGcGCcacgGCGCGGGGaagaGCg -3'
miRNA:   3'- aCGUCC-----------UCGGCUUuUG----UGCGUCCC----CG- -5'
5493 5' -56.2 NC_001798.1 + 2405 0.67 0.833746
Target:  5'- gGCGGcGGCCGAGGGCGC-CGGcguguggcuGGGCc -3'
miRNA:   3'- aCGUCcUCGGCUUUUGUGcGUC---------CCCG- -5'
5493 5' -56.2 NC_001798.1 + 2483 0.68 0.780751
Target:  5'- gGCGGGccGGCgGGucAGCGcCGCGGGGcGCg -3'
miRNA:   3'- aCGUCC--UCGgCUu-UUGU-GCGUCCC-CG- -5'
5493 5' -56.2 NC_001798.1 + 2535 0.72 0.570193
Target:  5'- gGCGGG-GCgGggGGCGCGgCccccgcgggAGGGGCg -3'
miRNA:   3'- aCGUCCuCGgCuuUUGUGC-G---------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 2573 0.7 0.692849
Target:  5'- cGCGGG-GCgGggGGCguccGCGCggcucuucuucgGGGGGCg -3'
miRNA:   3'- aCGUCCuCGgCuuUUG----UGCG------------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 2613 0.67 0.833746
Target:  5'- cGCGGGGcGCCGcccGGCgGCGCccuggccGGGGCg -3'
miRNA:   3'- aCGUCCU-CGGCuu-UUG-UGCGu------CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 2937 0.67 0.84198
Target:  5'- cGCAGcucgcgcAGCC--AGGCGCGCAggcGGGGCg -3'
miRNA:   3'- aCGUCc------UCGGcuUUUGUGCGU---CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 2982 0.78 0.285464
Target:  5'- gGCGGGgcGGCCGGcccgcGGGCcccggGCGCGGGGGCg -3'
miRNA:   3'- aCGUCC--UCGGCU-----UUUG-----UGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 3271 0.67 0.860943
Target:  5'- gGCGGGcaccgcgcgcucgucGGCCGgcGACGCcgccgccgacgGCAacGGGGCg -3'
miRNA:   3'- aCGUCC---------------UCGGCuuUUGUG-----------CGU--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 3431 0.71 0.652053
Target:  5'- aGCAGGGGCgCGuAGGCgcgGCGCAGGcuGGUc -3'
miRNA:   3'- aCGUCCUCG-GCuUUUG---UGCGUCC--CCG- -5'
5493 5' -56.2 NC_001798.1 + 3464 0.66 0.880134
Target:  5'- aGCAGGaAGCCcuucuGCGCGCGGucguagcGGCg -3'
miRNA:   3'- aCGUCC-UCGGcuuu-UGUGCGUCc------CCG- -5'
5493 5' -56.2 NC_001798.1 + 4086 0.67 0.84198
Target:  5'- cGCGGGGGuCCGG--GC-CGgGGcGGGCu -3'
miRNA:   3'- aCGUCCUC-GGCUuuUGuGCgUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 4120 0.69 0.752325
Target:  5'- gGCGGGcucGGCCGggG-CGcCGCccccGGGGCc -3'
miRNA:   3'- aCGUCC---UCGGCuuUuGU-GCGu---CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 4203 0.67 0.833746
Target:  5'- gGCGuGGucuGCgGc--GCugGCGGGGGCg -3'
miRNA:   3'- aCGU-CCu--CGgCuuuUGugCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 4358 0.67 0.825329
Target:  5'- aGCGccGGCgGggGGCGCGCcGGcGGCg -3'
miRNA:   3'- aCGUccUCGgCuuUUGUGCGuCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.