miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 154489 0.69 0.718964
Target:  5'- cGCGGGcGCCGccccuccccccGCGCGCcgcGGGGCu -3'
miRNA:   3'- aCGUCCuCGGCuuu--------UGUGCGu--CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 154393 0.73 0.530087
Target:  5'- gGgGGGGGCgCGAAGGCGgGCGGcGGCg -3'
miRNA:   3'- aCgUCCUCG-GCUUUUGUgCGUCcCCG- -5'
5493 5' -56.2 NC_001798.1 + 154284 0.67 0.832913
Target:  5'- cGCAGcccGGGCCGuguuGCGgGCccucuuaAGGGGCg -3'
miRNA:   3'- aCGUC---CUCGGCuuu-UGUgCG-------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 154177 0.79 0.253482
Target:  5'- gGCccGGAGCCG-GAGCGCGUcGGGGCg -3'
miRNA:   3'- aCGu-CCUCGGCuUUUGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 154064 0.66 0.887121
Target:  5'- gGCuGGAgcGCCGggGcGCggcacggcuggaGCGCcGGGGCg -3'
miRNA:   3'- aCGuCCU--CGGCuuU-UG------------UGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 154013 0.73 0.524155
Target:  5'- cGCAGGGaccauuugggagucuGCgguUGGGAGCGCGCcGGGGCg -3'
miRNA:   3'- aCGUCCU---------------CG---GCUUUUGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 153960 0.7 0.672517
Target:  5'- cGCAGGAG-CGAGGACGCgGCcGGcGCg -3'
miRNA:   3'- aCGUCCUCgGCUUUUGUG-CGuCCcCG- -5'
5493 5' -56.2 NC_001798.1 + 153801 0.69 0.771398
Target:  5'- gGCGGcGGCgGggGGCAgGCGGcGGCa -3'
miRNA:   3'- aCGUCcUCGgCuuUUGUgCGUCcCCG- -5'
5493 5' -56.2 NC_001798.1 + 153690 0.75 0.417393
Target:  5'- cGCGGGGGCCGcc-GCcgGCGCAGGcucaGGCg -3'
miRNA:   3'- aCGUCCUCGGCuuuUG--UGCGUCC----CCG- -5'
5493 5' -56.2 NC_001798.1 + 153595 0.73 0.500696
Target:  5'- cGUcaGGGGGUCGGAGGgGCGuCAGGGGg -3'
miRNA:   3'- aCG--UCCUCGGCUUUUgUGC-GUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 153557 0.73 0.500696
Target:  5'- cGUcaGGGGGUCGGAGGgGCGuCAGGGGg -3'
miRNA:   3'- aCG--UCCUCGGCUUUUgUGC-GUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 153522 0.74 0.444248
Target:  5'- -aCGGGGGUCGGAGGgGCGuCAGGGGg -3'
miRNA:   3'- acGUCCUCGGCUUUUgUGC-GUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 153087 0.67 0.854751
Target:  5'- gGCGGGGcggcGCCGGGcccucgcggauauAUACGC-GGGGCu -3'
miRNA:   3'- aCGUCCU----CGGCUUu------------UGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 153022 0.67 0.825329
Target:  5'- gGC-GGAGuCCGGGccCGCGCGGcGGCg -3'
miRNA:   3'- aCGuCCUC-GGCUUuuGUGCGUCcCCG- -5'
5493 5' -56.2 NC_001798.1 + 152183 0.67 0.850021
Target:  5'- aGgGGGGGCCuGAGAC-C-CGGGGGUc -3'
miRNA:   3'- aCgUCCUCGGcUUUUGuGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 151611 0.69 0.732827
Target:  5'- gGcCGGGGGCCGG----GC-CGGGGGCg -3'
miRNA:   3'- aC-GUCCUCGGCUuuugUGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 151449 0.74 0.461749
Target:  5'- gUGCAGGcAGg-GAAAACucuggcaGCGCAGGGGCg -3'
miRNA:   3'- -ACGUCC-UCggCUUUUG-------UGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 150883 0.67 0.838709
Target:  5'- cGCGGGucgcccccgcaccGCCGccccCGCGCcGGGGCg -3'
miRNA:   3'- aCGUCCu------------CGGCuuuuGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 150834 0.71 0.652053
Target:  5'- cGCGGGGcGCCaGggGGCGCcggucgggucGCGGcGGGCu -3'
miRNA:   3'- aCGUCCU-CGG-CuuUUGUG----------CGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 150636 0.69 0.76192
Target:  5'- cGCGcGGGGCUGucu-CGCG-GGGGGCg -3'
miRNA:   3'- aCGU-CCUCGGCuuuuGUGCgUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.