miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 2217 0.84 0.125229
Target:  5'- cGCAGcGGGCCcGAGGCGCGCAGcGGGCc -3'
miRNA:   3'- aCGUC-CUCGGcUUUUGUGCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 46677 0.82 0.158026
Target:  5'- gGCccGGGGCCGGAuAC-CGCGGGGGCg -3'
miRNA:   3'- aCGu-CCUCGGCUUuUGuGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 27487 0.81 0.184022
Target:  5'- cGCGGGGGCgGGcgcgggaaaaAAGcCGCGCGGGGGCg -3'
miRNA:   3'- aCGUCCUCGgCU----------UUU-GUGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 97603 0.81 0.188706
Target:  5'- cGCAGGGGCCGGAGA---GCuGGGGCg -3'
miRNA:   3'- aCGUCCUCGGCUUUUgugCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 85825 0.81 0.193494
Target:  5'- gGgGGGGGgCGggGGCGgGCGGGGGCu -3'
miRNA:   3'- aCgUCCUCgGCuuUUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 40441 0.8 0.203391
Target:  5'- gGCGGGGGUgCGGAAGCACGCGGuaGGGUg -3'
miRNA:   3'- aCGUCCUCG-GCUUUUGUGCGUC--CCCG- -5'
5493 5' -56.2 NC_001798.1 + 32322 0.8 0.226715
Target:  5'- cGCGGGGGCCGAggaagugugccaggaAGACGCGCcacgcGGaGGGCg -3'
miRNA:   3'- aCGUCCUCGGCU---------------UUUGUGCG-----UC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 26880 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 26954 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 26820 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 26910 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 26984 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 26850 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 125693 0.79 0.235743
Target:  5'- gGCgaAGGAGuCCGAcgucgggcGCGCGCGGGGGCg -3'
miRNA:   3'- aCG--UCCUC-GGCUuu------UGUGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 27014 0.79 0.235743
Target:  5'- gGCGGGGGUCGG--GCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 120404 0.79 0.24745
Target:  5'- cGCGGGGGCCGAucccguGAGCGCGCGGaGGa- -3'
miRNA:   3'- aCGUCCUCGGCU------UUUGUGCGUC-CCcg -5'
5493 5' -56.2 NC_001798.1 + 30939 0.79 0.24745
Target:  5'- gGCGGGGGUCGGgcgggGGGCGgGCGGGGGUc -3'
miRNA:   3'- aCGUCCUCGGCU-----UUUGUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 154177 0.79 0.253482
Target:  5'- gGCccGGAGCCG-GAGCGCGUcGGGGCg -3'
miRNA:   3'- aCGu-CCUCGGCuUUUGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 15038 0.79 0.264013
Target:  5'- gGCGGGAGCgUGggGcggaugggcccgggGCGCGCGGGGGg -3'
miRNA:   3'- aCGUCCUCG-GCuuU--------------UGUGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 36504 0.78 0.272303
Target:  5'- cGCGGGcGGCCGGgcggGGGCGCGCggcggccgggcGGGGGCg -3'
miRNA:   3'- aCGUCC-UCGGCU----UUUGUGCG-----------UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.