miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5493 5' -56.2 NC_001798.1 + 2982 0.78 0.285464
Target:  5'- gGCGGGgcGGCCGGcccgcGGGCcccggGCGCGGGGGCg -3'
miRNA:   3'- aCGUCC--UCGGCU-----UUUG-----UGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 27127 0.78 0.29223
Target:  5'- cGCAGGAGCgGGAGGgAagGCAcGGGGCg -3'
miRNA:   3'- aCGUCCUCGgCUUUUgUg-CGU-CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 36558 0.78 0.297041
Target:  5'- gGCGGGGGCgcgcggcggccgggCGggGGCGCGCggcggccgggcGGGGGCg -3'
miRNA:   3'- aCGUCCUCG--------------GCuuUUGUGCG-----------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 36699 0.77 0.313279
Target:  5'- cGCAGGGGagGGGAGgACGCGGGGGa -3'
miRNA:   3'- aCGUCCUCggCUUUUgUGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 97471 0.77 0.327939
Target:  5'- gGCuGGGGGCCGGcgGCGCGaccggGGGGGCc -3'
miRNA:   3'- aCG-UCCUCGGCUuuUGUGCg----UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 66544 0.77 0.327939
Target:  5'- gGCGGGGggcgcuGCCGAAggUuCGUGGGGGCa -3'
miRNA:   3'- aCGUCCU------CGGCUUuuGuGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 10701 0.77 0.335458
Target:  5'- cGCAGGGGaCCGcAGGCAUcCAGGGGUu -3'
miRNA:   3'- aCGUCCUC-GGCuUUUGUGcGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 136639 0.76 0.364358
Target:  5'- cUGCGGGguggcgcaaaacagGGCCGAGAGgACG-GGGGGCg -3'
miRNA:   3'- -ACGUCC--------------UCGGCUUUUgUGCgUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 137616 0.76 0.374095
Target:  5'- ---cGGAGCCGGugauGAGCGCGCccgcucgGGGGGCg -3'
miRNA:   3'- acguCCUCGGCU----UUUGUGCG-------UCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 150432 0.76 0.374914
Target:  5'- gGCGcGGGGCgGAcuccGGACGCGC-GGGGCg -3'
miRNA:   3'- aCGU-CCUCGgCU----UUUGUGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 43474 0.76 0.374914
Target:  5'- cGCGGGGGCgggcgUGAGGGC-CGCcGGGGCa -3'
miRNA:   3'- aCGUCCUCG-----GCUUUUGuGCGuCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 9655 0.75 0.391552
Target:  5'- cGCAGcGGGCC----GCGCGCGGaGGGCg -3'
miRNA:   3'- aCGUC-CUCGGcuuuUGUGCGUC-CCCG- -5'
5493 5' -56.2 NC_001798.1 + 31060 0.75 0.391552
Target:  5'- gGCGGGGGUCGG--GCACuaacCGGGGGCu -3'
miRNA:   3'- aCGUCCUCGGCUuuUGUGc---GUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 42233 0.75 0.407797
Target:  5'- cGCGGcGAcgaacGCCGGAAcguccucGCACGCGGGGGg -3'
miRNA:   3'- aCGUC-CU-----CGGCUUU-------UGUGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 42174 0.75 0.408664
Target:  5'- cGCGGGGccGCgGAAAACAUGgGcGGGGCg -3'
miRNA:   3'- aCGUCCU--CGgCUUUUGUGCgU-CCCCG- -5'
5493 5' -56.2 NC_001798.1 + 35394 0.75 0.417393
Target:  5'- gGCGuGGGGCCGGccgccggauGCcCGCGGGGGCc -3'
miRNA:   3'- aCGU-CCUCGGCUuu-------UGuGCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 144308 0.75 0.417393
Target:  5'- -cCAGGGGCaCGGAAGuCG-GCAGGGGCg -3'
miRNA:   3'- acGUCCUCG-GCUUUU-GUgCGUCCCCG- -5'
5493 5' -56.2 NC_001798.1 + 153690 0.75 0.417393
Target:  5'- cGCGGGGGCCGcc-GCcgGCGCAGGcucaGGCg -3'
miRNA:   3'- aCGUCCUCGGCuuuUG--UGCGUCC----CCG- -5'
5493 5' -56.2 NC_001798.1 + 27260 0.75 0.417393
Target:  5'- cGCGGGAccgcaGCCccguGGCGCGCGGGGGg -3'
miRNA:   3'- aCGUCCU-----CGGcuu-UUGUGCGUCCCCg -5'
5493 5' -56.2 NC_001798.1 + 47038 0.75 0.426235
Target:  5'- gGCAGGcGCacgcggcguuauCGggGACGCGCAaugccGGGGCg -3'
miRNA:   3'- aCGUCCuCG------------GCuuUUGUGCGU-----CCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.