miRNA display CGI


Results 61 - 80 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 35399 0.67 0.705428
Target:  5'- gGGGCcGGCCGCCGgaugcCCGcGGGggCCUAa -3'
miRNA:   3'- -CCCGcUUGGUGGU-----GGC-CCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 147184 0.67 0.705428
Target:  5'- cGGGCGGAaggcguCCcCCGcCCGGcGGUccggCCCGGg -3'
miRNA:   3'- -CCCGCUU------GGuGGU-GGCC-CCAa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 74882 0.67 0.702526
Target:  5'- cGGUGggUCGCCACCGGGcgcgcuauucuaccGgcuugCCCAa -3'
miRNA:   3'- cCCGCuuGGUGGUGGCCC--------------Caa---GGGUc -5'
5494 3' -59.7 NC_001798.1 + 15561 0.68 0.691845
Target:  5'- cGGGCGuuGCCGCCGCCGcggcGGGgaguggcgacgacUCCaCGGa -3'
miRNA:   3'- -CCCGCu-UGGUGGUGGC----CCCa------------AGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 150214 0.68 0.685995
Target:  5'- gGGGUGuuGgUGCCGCgGGGGacCCCGGg -3'
miRNA:   3'- -CCCGCu-UgGUGGUGgCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 4069 0.68 0.685995
Target:  5'- aGGCGGcCCGCgguCGCCGcGGGggUCCGGg -3'
miRNA:   3'- cCCGCUuGGUG---GUGGC-CCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 32559 0.68 0.676212
Target:  5'- uGGCGGACCugCugCGGGccgcggCCCc- -3'
miRNA:   3'- cCCGCUUGGugGugGCCCcaa---GGGuc -5'
5494 3' -59.7 NC_001798.1 + 101952 0.68 0.676212
Target:  5'- uGGGgGGACCGCC-CCGGauagaGGaggcCCCGGg -3'
miRNA:   3'- -CCCgCUUGGUGGuGGCC-----CCaa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 16138 0.68 0.676212
Target:  5'- gGGGCGGAaUACCauACCGGGGgcaCCgAGc -3'
miRNA:   3'- -CCCGCUUgGUGG--UGGCCCCaa-GGgUC- -5'
5494 3' -59.7 NC_001798.1 + 104546 0.68 0.676212
Target:  5'- cGGUGGGCCACguCGUCGGGGUUCaCgCGGg -3'
miRNA:   3'- cCCGCUUGGUG--GUGGCCCCAAG-G-GUC- -5'
5494 3' -59.7 NC_001798.1 + 94256 0.68 0.666395
Target:  5'- uGGCccuGAGCCaguGCCACgGGGuGUUCgCCGGg -3'
miRNA:   3'- cCCG---CUUGG---UGGUGgCCC-CAAG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 31058 0.68 0.666395
Target:  5'- cGGGCGGgggucgGgCACUaACCGGGGgcUCCCGu -3'
miRNA:   3'- -CCCGCU------UgGUGG-UGGCCCCa-AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 85025 0.68 0.666395
Target:  5'- uGGCGAcguCCGCC-CCGGGGgUgCCGu -3'
miRNA:   3'- cCCGCUu--GGUGGuGGCCCCaAgGGUc -5'
5494 3' -59.7 NC_001798.1 + 92501 0.68 0.666395
Target:  5'- cGGCG-GCCGCCACCuGGcc-CCCAGc -3'
miRNA:   3'- cCCGCuUGGUGGUGGcCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 96352 0.68 0.666395
Target:  5'- cGGCGGcACCugCgGCCGGGGcuggaggCUCAGg -3'
miRNA:   3'- cCCGCU-UGGugG-UGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 47076 0.68 0.663444
Target:  5'- gGGGCGAcAgCGCCGgugugguguccgucCCGGGGgUCCUGGu -3'
miRNA:   3'- -CCCGCU-UgGUGGU--------------GGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 51185 0.68 0.656552
Target:  5'- cGGGCGGcggcGCCcccCCGCCGGGcGUccuuuccgcgcCCCAGg -3'
miRNA:   3'- -CCCGCU----UGGu--GGUGGCCC-CAa----------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 34856 0.68 0.656552
Target:  5'- cGGGCGGGggacgccuuCCGCCcggcGCCGGGcGgcuaCCCGGg -3'
miRNA:   3'- -CCCGCUU---------GGUGG----UGGCCC-Caa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 57949 0.68 0.646691
Target:  5'- aGGGCGAaaucAUCACaCGCCGGuGGUaUUCGGg -3'
miRNA:   3'- -CCCGCU----UGGUG-GUGGCC-CCAaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 39797 0.68 0.646691
Target:  5'- aGGCGcGACCACaCGCCGGuGGU-CgCGGg -3'
miRNA:   3'- cCCGC-UUGGUG-GUGGCC-CCAaGgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.