miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 24658 0.67 0.743538
Target:  5'- cGGCGAccugGCgGCCguGCCGGGGcuggccggagCCCGGc -3'
miRNA:   3'- cCCGCU----UGgUGG--UGGCCCCaa--------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29042 0.67 0.743538
Target:  5'- cGGCG-ACCGCCccgcGCCGGc-UUCCCGGu -3'
miRNA:   3'- cCCGCuUGGUGG----UGGCCccAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 69727 0.67 0.743538
Target:  5'- cGGGCGAAggcggcuuCCGCCuCUGGuGGgUUCCGGu -3'
miRNA:   3'- -CCCGCUU--------GGUGGuGGCC-CCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24880 0.67 0.734126
Target:  5'- -cGUGAGCCuggUCGCCGGGGcccugggCCCGGc -3'
miRNA:   3'- ccCGCUUGGu--GGUGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29517 0.67 0.734126
Target:  5'- gGGGgGAuucccucccuccGCCcCCGCCGGGGcgCgCGGc -3'
miRNA:   3'- -CCCgCU------------UGGuGGUGGCCCCaaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 151586 0.67 0.734126
Target:  5'- cGGGCGugggGCUGCCcuggcgcucgGCCGGGGg--CCGGg -3'
miRNA:   3'- -CCCGCu---UGGUGG----------UGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 36640 0.67 0.734126
Target:  5'- cGGGCGGGggcgcgcuuuccCCGCguCGCCccucGGGUUCCCAa -3'
miRNA:   3'- -CCCGCUU------------GGUG--GUGGc---CCCAAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 106720 0.67 0.734126
Target:  5'- cGGCGucccguccuAGCCAUCGCCaGGGGgccUCCGGa -3'
miRNA:   3'- cCCGC---------UUGGUGGUGG-CCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 150656 0.67 0.734126
Target:  5'- gGGGCGuccugcccuCCGCCGCCGcGGcGUcuucgCCCAc -3'
miRNA:   3'- -CCCGCuu-------GGUGGUGGC-CC-CAa----GGGUc -5'
5494 3' -59.7 NC_001798.1 + 151349 0.67 0.73318
Target:  5'- uGGCGGucacGCCcacuaucagguacGCCACCGGGGUguugCaCAGg -3'
miRNA:   3'- cCCGCU----UGG-------------UGGUGGCCCCAa---GgGUC- -5'
5494 3' -59.7 NC_001798.1 + 78098 0.67 0.73318
Target:  5'- cGGGCGAcggguuuaucgACUACCACgaggccgUGGGGcgCCUGGc -3'
miRNA:   3'- -CCCGCU-----------UGGUGGUG-------GCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 7025 0.67 0.724631
Target:  5'- aGGGUGuGACCcCCccauggcauCCGGGGUUucCCCGGc -3'
miRNA:   3'- -CCCGC-UUGGuGGu--------GGCCCCAA--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 114681 0.67 0.724631
Target:  5'- cGGGCGccUgGCgACCaGGGUUgCCCGGg -3'
miRNA:   3'- -CCCGCuuGgUGgUGGcCCCAA-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 3372 0.67 0.724631
Target:  5'- uGGCGucGCCGCCGucgUCGGGGguucgcgcCCCGGu -3'
miRNA:   3'- cCCGCu-UGGUGGU---GGCCCCaa------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24135 0.67 0.724631
Target:  5'- uGGcGCGGGCCGugccCCACCuGGGGUaCgCCAu -3'
miRNA:   3'- -CC-CGCUUGGU----GGUGG-CCCCAaG-GGUc -5'
5494 3' -59.7 NC_001798.1 + 117512 0.67 0.724631
Target:  5'- uGGCGGGaaACCgGCUGGGGccggCCCAGc -3'
miRNA:   3'- cCCGCUUggUGG-UGGCCCCaa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 152052 0.67 0.715063
Target:  5'- gGGGCGGcgcACgGcCCACgGGGGUccCCCGa -3'
miRNA:   3'- -CCCGCU---UGgU-GGUGgCCCCAa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 83761 0.67 0.715063
Target:  5'- -aGCcccGCCGCCagcaacagaagcGCCGGGGggCCCGGa -3'
miRNA:   3'- ccCGcu-UGGUGG------------UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 66024 0.67 0.715063
Target:  5'- aGGGCGAugUggcGCaUGCCGcGGGUcgCCCGGc -3'
miRNA:   3'- -CCCGCUugG---UG-GUGGC-CCCAa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24470 0.67 0.715063
Target:  5'- gGGGUGcucGCCGCC-CUGGGGcgCCUg- -3'
miRNA:   3'- -CCCGCu--UGGUGGuGGCCCCaaGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.