miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 86271 0.66 0.780197
Target:  5'- gGGcGCGGGCgCACCGgCGGGGaaugCCUg- -3'
miRNA:   3'- -CC-CGCUUG-GUGGUgGCCCCaa--GGGuc -5'
5494 3' -59.7 NC_001798.1 + 3834 0.66 0.780197
Target:  5'- cGGGCGccCC-CCagagGCCGGGGcggcugucgCCCAGc -3'
miRNA:   3'- -CCCGCuuGGuGG----UGGCCCCaa-------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 46611 0.66 0.780197
Target:  5'- gGGGCuacGACCACgGCCaGGacGGUUCCgCGGu -3'
miRNA:   3'- -CCCGc--UUGGUGgUGG-CC--CCAAGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 73953 0.66 0.780197
Target:  5'- gGGGCGAguggacGCgCGCgGCCGcGGGcUCCgGGc -3'
miRNA:   3'- -CCCGCU------UG-GUGgUGGC-CCCaAGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 128878 0.66 0.780197
Target:  5'- uGGCGcGGCgAUCGCCGGaGGcgUUCCGGg -3'
miRNA:   3'- cCCGC-UUGgUGGUGGCC-CCa-AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 43478 0.66 0.772102
Target:  5'- gGGGCGGGCgugaggGCCGCCGGGGcauacgugcgcgcgCgCAGg -3'
miRNA:   3'- -CCCGCUUGg-----UGGUGGCCCCaa------------GgGUC- -5'
5494 3' -59.7 NC_001798.1 + 139009 0.66 0.771197
Target:  5'- cGGCGAuAUCGCCcucCCGGGcGUUCCg-- -3'
miRNA:   3'- cCCGCU-UGGUGGu--GGCCC-CAAGGguc -5'
5494 3' -59.7 NC_001798.1 + 79510 0.66 0.771197
Target:  5'- gGGGCGAGgcguauCUGCgCGCCGGcGGagaCCCGGg -3'
miRNA:   3'- -CCCGCUU------GGUG-GUGGCC-CCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 36317 0.66 0.771197
Target:  5'- gGGcGCGGGCCGggGCCGGGGcUCgCUGGu -3'
miRNA:   3'- -CC-CGCUUGGUggUGGCCCCaAG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 111085 0.66 0.77029
Target:  5'- cGGGCGAgacggACCcCC-CCGGGGUcaggcguugcgagUCCaCAa -3'
miRNA:   3'- -CCCGCU-----UGGuGGuGGCCCCA-------------AGG-GUc -5'
5494 3' -59.7 NC_001798.1 + 52930 0.66 0.77029
Target:  5'- uGGGCGAcgaggagACCGCCGCCcuccGGGcgcacgugUCCgGGa -3'
miRNA:   3'- -CCCGCU-------UGGUGGUGGc---CCCa-------AGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 60883 0.66 0.765741
Target:  5'- gGGGCGGcgGCCgcACCGCCGGGaagaugagccaugccGcgacgcUCCCGGg -3'
miRNA:   3'- -CCCGCU--UGG--UGGUGGCCC---------------Ca-----AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 108667 0.66 0.762082
Target:  5'- cGGcCGAcgcaacgcGCCGCCcCCGGGGccgCCCGc -3'
miRNA:   3'- cCC-GCU--------UGGUGGuGGCCCCaa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 9982 0.66 0.762082
Target:  5'- -uGCGGACCGCCA--GGcGGUacgCCCAGg -3'
miRNA:   3'- ccCGCUUGGUGGUggCC-CCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 45930 0.66 0.759326
Target:  5'- gGGGUggcggucgcguccgGAACC-CCuCUGGGGUaggCCCGGa -3'
miRNA:   3'- -CCCG--------------CUUGGuGGuGGCCCCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 61827 0.67 0.752859
Target:  5'- cGGGCacGCCuucGCC-CCGGGGga-CCGGg -3'
miRNA:   3'- -CCCGcuUGG---UGGuGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 15049 0.67 0.752859
Target:  5'- gGGGCGGAUgGgC-CCGGGGcgCgCGGg -3'
miRNA:   3'- -CCCGCUUGgUgGuGGCCCCaaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 78329 0.67 0.747278
Target:  5'- cGGa-GGCCACCgcggagcugguccggACCGGGGUcacccugccgugUCCCAGc -3'
miRNA:   3'- cCCgcUUGGUGG---------------UGGCCCCA------------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29042 0.67 0.743538
Target:  5'- cGGCG-ACCGCCccgcGCCGGc-UUCCCGGu -3'
miRNA:   3'- cCCGCuUGGUGG----UGGCCccAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24658 0.67 0.743538
Target:  5'- cGGCGAccugGCgGCCguGCCGGGGcuggccggagCCCGGc -3'
miRNA:   3'- cCCGCU----UGgUGG--UGGCCCCaa--------GGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.