Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5494 | 3' | -59.7 | NC_001798.1 | + | 106097 | 0.66 | 0.797817 |
Target: 5'- cGGCGAcccggcgccGCgACCGCCGGGucugcggUUCCGGc -3' miRNA: 3'- cCCGCU---------UGgUGGUGGCCCca-----AGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 28992 | 0.66 | 0.797817 |
Target: 5'- gGGGCGGcgccggccaaccGCgCGCCGCCGcGcGggCCCGGa -3' miRNA: 3'- -CCCGCU------------UG-GUGGUGGC-CcCaaGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 5898 | 0.66 | 0.797817 |
Target: 5'- cGGGCu--CCGCC-CCGaGGcGggCCCGGa -3' miRNA: 3'- -CCCGcuuGGUGGuGGC-CC-CaaGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 120337 | 0.66 | 0.797817 |
Target: 5'- -uGCGAAaCGCC-CCGGGGUgcagCgCCAGc -3' miRNA: 3'- ccCGCUUgGUGGuGGCCCCAa---G-GGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 48383 | 0.66 | 0.797817 |
Target: 5'- gGGGCGuGCCGCCgcgACCGcacGGGccCCCGc -3' miRNA: 3'- -CCCGCuUGGUGG---UGGC---CCCaaGGGUc -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 15920 | 0.66 | 0.797817 |
Target: 5'- gGGGCGuacgGACCgucaucuaggGCC-CCGGGGg-CCCAa -3' miRNA: 3'- -CCCGC----UUGG----------UGGuGGCCCCaaGGGUc -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 15827 | 0.66 | 0.797817 |
Target: 5'- aGGC--GCCGCCcgguUCGGGGggCCCGa -3' miRNA: 3'- cCCGcuUGGUGGu---GGCCCCaaGGGUc -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 59753 | 0.66 | 0.797817 |
Target: 5'- gGGGUGccuCCGCUugguucCCGGcGGUUCCgGGa -3' miRNA: 3'- -CCCGCuu-GGUGGu-----GGCC-CCAAGGgUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 19717 | 0.66 | 0.789073 |
Target: 5'- uGGCaAACaCACCggGCUGGGGgUCCCGc -3' miRNA: 3'- cCCGcUUG-GUGG--UGGCCCCaAGGGUc -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 127851 | 0.66 | 0.785537 |
Target: 5'- uGGGCcccgccccgccCCACCccgccccacgucACCGGGGgcCCCGGg -3' miRNA: 3'- -CCCGcuu--------GGUGG------------UGGCCCCaaGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 22356 | 0.66 | 0.786423 |
Target: 5'- gGGGCgGGGCCGcgcauaaugcgguuCCACCuGGGGgcggaacCCCGGc -3' miRNA: 3'- -CCCG-CUUGGU--------------GGUGG-CCCCaa-----GGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 2610 | 0.66 | 0.789073 |
Target: 5'- gGGcGCGGGgCGCCGcCCGGcGGcgCCCuGg -3' miRNA: 3'- -CC-CGCUUgGUGGU-GGCC-CCaaGGGuC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 97476 | 0.66 | 0.789073 |
Target: 5'- gGGGCcGGCggCGCgACCGGGGgggCCgAGg -3' miRNA: 3'- -CCCGcUUG--GUGgUGGCCCCaa-GGgUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 147227 | 0.66 | 0.789073 |
Target: 5'- cGGCGGAgCgcggggGCC-CCGGGGc-CCCGGg -3' miRNA: 3'- cCCGCUUgG------UGGuGGCCCCaaGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 9118 | 0.66 | 0.789073 |
Target: 5'- cGGGgGAGCCGCCGCgaGGuGGUcUgCGGc -3' miRNA: 3'- -CCCgCUUGGUGGUGg-CC-CCAaGgGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 24658 | 0.67 | 0.743538 |
Target: 5'- cGGCGAccugGCgGCCguGCCGGGGcuggccggagCCCGGc -3' miRNA: 3'- cCCGCU----UGgUGG--UGGCCCCaa--------GGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 15049 | 0.67 | 0.752859 |
Target: 5'- gGGGCGGAUgGgC-CCGGGGcgCgCGGg -3' miRNA: 3'- -CCCGCUUGgUgGuGGCCCCaaGgGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 78329 | 0.67 | 0.747278 |
Target: 5'- cGGa-GGCCACCgcggagcugguccggACCGGGGUcacccugccgugUCCCAGc -3' miRNA: 3'- cCCgcUUGGUGG---------------UGGCCCCA------------AGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 69727 | 0.67 | 0.743538 |
Target: 5'- cGGGCGAAggcggcuuCCGCCuCUGGuGGgUUCCGGu -3' miRNA: 3'- -CCCGCUU--------GGUGGuGGCC-CCaAGGGUC- -5' |
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5494 | 3' | -59.7 | NC_001798.1 | + | 29042 | 0.67 | 0.743538 |
Target: 5'- cGGCG-ACCGCCccgcGCCGGc-UUCCCGGu -3' miRNA: 3'- cCCGCuUGGUGG----UGGCCccAAGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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