miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 4118 0.72 0.438086
Target:  5'- uGGGCGGGCU-CgGCCGGGGcgccgccCCCGGg -3'
miRNA:   3'- -CCCGCUUGGuGgUGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 3771 0.72 0.446829
Target:  5'- cGGGCGc-CCACacgggCGCCGGGGcgCCCGa -3'
miRNA:   3'- -CCCGCuuGGUG-----GUGGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 76964 0.71 0.472719
Target:  5'- cGGGCGGACCuguggggGCUGCUGGGGcaguaCCGGg -3'
miRNA:   3'- -CCCGCUUGG-------UGGUGGCCCCaag--GGUC- -5'
5494 3' -59.7 NC_001798.1 + 34809 0.71 0.473626
Target:  5'- gGGGCcccgGGGCCcccgcgcuCCGCCGGGGg-CCCGGg -3'
miRNA:   3'- -CCCG----CUUGGu-------GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 76903 0.71 0.473626
Target:  5'- gGGGUGGACCgaccuggccgauGCCGuCCGGGGccccccCCCGGa -3'
miRNA:   3'- -CCCGCUUGG------------UGGU-GGCCCCaa----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 66812 0.71 0.47726
Target:  5'- cGGGUccgucgcgGAGCCcggcccggugccggcGCCcagGCCGGGGUUUCCGGg -3'
miRNA:   3'- -CCCG--------CUUGG---------------UGG---UGGCCCCAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 48971 0.71 0.481822
Target:  5'- gGGGUuucGCCACCgccccccaggccaGCCGGGGgUCCCAa -3'
miRNA:   3'- -CCCGcu-UGGUGG-------------UGGCCCCaAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 122116 0.71 0.482736
Target:  5'- gGGGCGcuUUGCCAgCCGGGGgggccCCCGGg -3'
miRNA:   3'- -CCCGCuuGGUGGU-GGCCCCaa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29382 0.71 0.501205
Target:  5'- gGGGCGGgcaccacucaggGCCGCgccggcggggCGCCGGGGggacUCCCAu -3'
miRNA:   3'- -CCCGCU------------UGGUG----------GUGGCCCCa---AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 153680 0.71 0.501205
Target:  5'- cGGGCGGggacgcggggGCCGCCGCCGGcgcaggcucaGGcgCgCCAGg -3'
miRNA:   3'- -CCCGCU----------UGGUGGUGGCC----------CCaaG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 25583 0.71 0.509618
Target:  5'- cGGGCGAggaccugGCCGCgggccgCGCCGGGGgcgggcccccCCCGGa -3'
miRNA:   3'- -CCCGCU-------UGGUG------GUGGCCCCaa--------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 54369 0.71 0.519978
Target:  5'- cGGCGu-CCGgcCCACCGGGGggCCgCGGc -3'
miRNA:   3'- cCCGCuuGGU--GGUGGCCCCaaGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 15387 0.71 0.519978
Target:  5'- cGGCGGAggcgcCCACCGgacCCGGGGUUgcgggUCCGGg -3'
miRNA:   3'- cCCGCUU-----GGUGGU---GGCCCCAA-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 86874 0.7 0.529468
Target:  5'- cGGCGGucgcgcuuuuCCGCCGCCGGGaacCCCGGc -3'
miRNA:   3'- cCCGCUu---------GGUGGUGGCCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 98629 0.7 0.538063
Target:  5'- cGGGCGGcgugGCCGCgACCgucgcggcgaacgGGGGUcccgccUCCCGGc -3'
miRNA:   3'- -CCCGCU----UGGUGgUGG-------------CCCCA------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28806 0.7 0.539021
Target:  5'- cGGGUccuCCGCCGCCGcGGG--CCCGGg -3'
miRNA:   3'- -CCCGcuuGGUGGUGGC-CCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 9151 0.7 0.539021
Target:  5'- cGGGCGcggcGCCGCCcgcGCCGGGGggcagggUCUCuGg -3'
miRNA:   3'- -CCCGCu---UGGUGG---UGGCCCCa------AGGGuC- -5'
5494 3' -59.7 NC_001798.1 + 125295 0.7 0.548632
Target:  5'- aGGCGcGCCACCGCCcgcaccagcucGGGGg--CCAGg -3'
miRNA:   3'- cCCGCuUGGUGGUGG-----------CCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 30700 0.7 0.548632
Target:  5'- uGGGCGuGACCGCCAgCGGGucGUucagcaccaUCCCGa -3'
miRNA:   3'- -CCCGC-UUGGUGGUgGCCC--CA---------AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 132132 0.7 0.568007
Target:  5'- aGGCGGcCCugcGCCGCCGGGGg--CCGGc -3'
miRNA:   3'- cCCGCUuGG---UGGUGGCCCCaagGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.