miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 66378 0.83 0.098254
Target:  5'- cGGGCGGACCGCCGCaccaGGGGUUugaaCCCGu -3'
miRNA:   3'- -CCCGCUUGGUGGUGg---CCCCAA----GGGUc -5'
5494 3' -59.7 NC_001798.1 + 147474 0.82 0.114405
Target:  5'- -cGUGAGCCGuCCGCCGGGGgaCCCAGg -3'
miRNA:   3'- ccCGCUUGGU-GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 154100 0.8 0.143326
Target:  5'- gGGGCGcGGCCGgCGCCGGGGacCCCGGc -3'
miRNA:   3'- -CCCGC-UUGGUgGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 27923 0.79 0.166176
Target:  5'- gGGGUcc-CCGCCGCCGGGG-UCCCGGc -3'
miRNA:   3'- -CCCGcuuGGUGGUGGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 25259 0.78 0.196919
Target:  5'- aGGGCGGcuggcgccGCCAgCCGCCGGGG--CCCAGc -3'
miRNA:   3'- -CCCGCU--------UGGU-GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 150171 0.77 0.220256
Target:  5'- gGGGCGGGCCGCCGCCcccuccgcggcgugGGGGgcggCaCCGGg -3'
miRNA:   3'- -CCCGCUUGGUGGUGG--------------CCCCaa--G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 2083 0.77 0.221823
Target:  5'- cGGCGGACCACU-CCGGGGggggCCCGc -3'
miRNA:   3'- cCCGCUUGGUGGuGGCCCCaa--GGGUc -5'
5494 3' -59.7 NC_001798.1 + 102499 0.77 0.243634
Target:  5'- gGGGaCGGGCCGgCGCCGGGGUgUCCgUAGg -3'
miRNA:   3'- -CCC-GCUUGGUgGUGGCCCCA-AGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 152236 0.76 0.249358
Target:  5'- cGGCG-GCCGCUcgggGCCGGGGUccgCCCGGg -3'
miRNA:   3'- cCCGCuUGGUGG----UGGCCCCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 79968 0.75 0.286057
Target:  5'- cGGCGGcgccgcguccGCCGCCGggcccCCGGGGgUCCCAGc -3'
miRNA:   3'- cCCGCU----------UGGUGGU-----GGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 71234 0.75 0.286057
Target:  5'- aGGgGAGCCGCCcuccGCCGGGG--CCCAGc -3'
miRNA:   3'- cCCgCUUGGUGG----UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 147021 0.74 0.34142
Target:  5'- cGGGCGGGCCggggcuugGCCGCCGaGGUgcgcCCCGGc -3'
miRNA:   3'- -CCCGCUUGG--------UGGUGGCcCCAa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5290 0.74 0.348861
Target:  5'- aGGaGCGAucgacGCCGCCgcgccccggcucGCCGGGGUUccgccCCCAGg -3'
miRNA:   3'- -CC-CGCU-----UGGUGG------------UGGCCCCAA-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 2251 0.74 0.356418
Target:  5'- cGGCGGGCgCGCCGCCGGGGgg-CgGGg -3'
miRNA:   3'- cCCGCUUG-GUGGUGGCCCCaagGgUC- -5'
5494 3' -59.7 NC_001798.1 + 39741 0.73 0.387778
Target:  5'- -uGCGGGCCACCuuccccCCGuGcGGUUCCCGGg -3'
miRNA:   3'- ccCGCUUGGUGGu-----GGC-C-CCAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 3978 0.73 0.387778
Target:  5'- cGGCGuccAGCUcgACCGCCGGGGccgCCCGGc -3'
miRNA:   3'- cCCGC---UUGG--UGGUGGCCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 67571 0.73 0.395896
Target:  5'- gGGGCG-ACCucggGCUcCCGGGGUUCCUg- -3'
miRNA:   3'- -CCCGCuUGG----UGGuGGCCCCAAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 41441 0.73 0.399996
Target:  5'- cGGGCGugggggguccauGCC-CCGCCGGGGggggcggucggcgggCCCAGa -3'
miRNA:   3'- -CCCGCu-----------UGGuGGUGGCCCCaa-------------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 102240 0.73 0.412458
Target:  5'- gGGGCGGGCC-UCGCCcGGGUaauacgggaagUCCCGGu -3'
miRNA:   3'- -CCCGCUUGGuGGUGGcCCCA-----------AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 23857 0.72 0.420898
Target:  5'- uGGGCGAcaGCCGCCccggccuCUGGGGggcgCCCGa -3'
miRNA:   3'- -CCCGCU--UGGUGGu------GGCCCCaa--GGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.