miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 2083 0.77 0.221823
Target:  5'- cGGCGGACCACU-CCGGGGggggCCCGc -3'
miRNA:   3'- cCCGCUUGGUGGuGGCCCCaa--GGGUc -5'
5494 3' -59.7 NC_001798.1 + 2251 0.74 0.356418
Target:  5'- cGGCGGGCgCGCCGCCGGGGgg-CgGGg -3'
miRNA:   3'- cCCGCUUG-GUGGUGGCCCCaagGgUC- -5'
5494 3' -59.7 NC_001798.1 + 2610 0.66 0.789073
Target:  5'- gGGcGCGGGgCGCCGcCCGGcGGcgCCCuGg -3'
miRNA:   3'- -CC-CGCUUgGUGGU-GGCC-CCaaGGGuC- -5'
5494 3' -59.7 NC_001798.1 + 3372 0.67 0.724631
Target:  5'- uGGCGucGCCGCCGucgUCGGGGguucgcgcCCCGGu -3'
miRNA:   3'- cCCGCu-UGGUGGU---GGCCCCaa------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 3771 0.72 0.446829
Target:  5'- cGGGCGc-CCACacgggCGCCGGGGcgCCCGa -3'
miRNA:   3'- -CCCGCuuGGUG-----GUGGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 3834 0.66 0.780197
Target:  5'- cGGGCGccCC-CCagagGCCGGGGcggcugucgCCCAGc -3'
miRNA:   3'- -CCCGCuuGGuGG----UGGCCCCaa-------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 3978 0.73 0.387778
Target:  5'- cGGCGuccAGCUcgACCGCCGGGGccgCCCGGc -3'
miRNA:   3'- cCCGC---UUGG--UGGUGGCCCCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 4033 0.69 0.617074
Target:  5'- cGGCcGGCCACCGCCGcGcGggCCCGGc -3'
miRNA:   3'- cCCGcUUGGUGGUGGC-CcCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 4069 0.68 0.685995
Target:  5'- aGGCGGcCCGCgguCGCCGcGGGggUCCGGg -3'
miRNA:   3'- cCCGCUuGGUG---GUGGC-CCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 4118 0.72 0.438086
Target:  5'- uGGGCGGGCU-CgGCCGGGGcgccgccCCCGGg -3'
miRNA:   3'- -CCCGCUUGGuGgUGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5290 0.74 0.348861
Target:  5'- aGGaGCGAucgacGCCGCCgcgccccggcucGCCGGGGUUccgccCCCAGg -3'
miRNA:   3'- -CC-CGCU-----UGGUGG------------UGGCCCCAA-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5898 0.66 0.797817
Target:  5'- cGGGCu--CCGCC-CCGaGGcGggCCCGGa -3'
miRNA:   3'- -CCCGcuuGGUGGuGGC-CC-CaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 5928 0.66 0.783762
Target:  5'- gGGGCGGGCCGuuCCucgcgcacauaaaggGCCGGcg-UCCCGGu -3'
miRNA:   3'- -CCCGCUUGGU--GG---------------UGGCCccaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 6365 0.69 0.59737
Target:  5'- gGGGaCGGGCCgggggGCCgggggGCCGGGGggCCgGGg -3'
miRNA:   3'- -CCC-GCUUGG-----UGG-----UGGCCCCaaGGgUC- -5'
5494 3' -59.7 NC_001798.1 + 7025 0.67 0.724631
Target:  5'- aGGGUGuGACCcCCccauggcauCCGGGGUUucCCCGGc -3'
miRNA:   3'- -CCCGC-UUGGuGGu--------GGCCCCAA--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 9118 0.66 0.789073
Target:  5'- cGGGgGAGCCGCCGCgaGGuGGUcUgCGGc -3'
miRNA:   3'- -CCCgCUUGGUGGUGg-CC-CCAaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 9151 0.7 0.539021
Target:  5'- cGGGCGcggcGCCGCCcgcGCCGGGGggcagggUCUCuGg -3'
miRNA:   3'- -CCCGCu---UGGUGG---UGGCCCCa------AGGGuC- -5'
5494 3' -59.7 NC_001798.1 + 9982 0.66 0.762082
Target:  5'- -uGCGGACCGCCA--GGcGGUacgCCCAGg -3'
miRNA:   3'- ccCGCUUGGUGGUggCC-CCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 10697 0.69 0.58755
Target:  5'- cGGGCGcagggGACCGCaggcauCCaGGGGUUCCgCGGc -3'
miRNA:   3'- -CCCGC-----UUGGUGgu----GG-CCCCAAGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 15049 0.67 0.752859
Target:  5'- gGGGCGGAUgGgC-CCGGGGcgCgCGGg -3'
miRNA:   3'- -CCCGCUUGgUgGuGGCCCCaaGgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.