miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 154100 0.8 0.143326
Target:  5'- gGGGCGcGGCCGgCGCCGGGGacCCCGGc -3'
miRNA:   3'- -CCCGC-UUGGUgGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 153680 0.71 0.501205
Target:  5'- cGGGCGGggacgcggggGCCGCCGCCGGcgcaggcucaGGcgCgCCAGg -3'
miRNA:   3'- -CCCGCU----------UGGUGGUGGCC----------CCaaG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 152236 0.76 0.249358
Target:  5'- cGGCG-GCCGCUcgggGCCGGGGUccgCCCGGg -3'
miRNA:   3'- cCCGCuUGGUGG----UGGCCCCAa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 152052 0.67 0.715063
Target:  5'- gGGGCGGcgcACgGcCCACgGGGGUccCCCGa -3'
miRNA:   3'- -CCCGCU---UGgU-GGUGgCCCCAa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 151586 0.67 0.734126
Target:  5'- cGGGCGugggGCUGCCcuggcgcucgGCCGGGGg--CCGGg -3'
miRNA:   3'- -CCCGCu---UGGUGG----------UGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 151349 0.67 0.73318
Target:  5'- uGGCGGucacGCCcacuaucagguacGCCACCGGGGUguugCaCAGg -3'
miRNA:   3'- cCCGCU----UGG-------------UGGUGGCCCCAa---GgGUC- -5'
5494 3' -59.7 NC_001798.1 + 150656 0.67 0.734126
Target:  5'- gGGGCGuccugcccuCCGCCGCCGcGGcGUcuucgCCCAc -3'
miRNA:   3'- -CCCGCuu-------GGUGGUGGC-CC-CAa----GGGUc -5'
5494 3' -59.7 NC_001798.1 + 150457 0.68 0.646691
Target:  5'- gGGGCG-ACgGCCGCgCGGGGgcgCgCGGc -3'
miRNA:   3'- -CCCGCuUGgUGGUG-GCCCCaa-GgGUC- -5'
5494 3' -59.7 NC_001798.1 + 150214 0.68 0.685995
Target:  5'- gGGGUGuuGgUGCCGCgGGGGacCCCGGg -3'
miRNA:   3'- -CCCGCu-UgGUGGUGgCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 150171 0.77 0.220256
Target:  5'- gGGGCGGGCCGCCGCCcccuccgcggcgugGGGGgcggCaCCGGg -3'
miRNA:   3'- -CCCGCUUGGUGGUGG--------------CCCCaa--G-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 150004 0.7 0.568007
Target:  5'- gGGGCGAGCgGCCcgugGCCGcGGUcgCCCGa -3'
miRNA:   3'- -CCCGCUUGgUGG----UGGCcCCAa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 147474 0.82 0.114405
Target:  5'- -cGUGAGCCGuCCGCCGGGGgaCCCAGg -3'
miRNA:   3'- ccCGCUUGGU-GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 147227 0.66 0.789073
Target:  5'- cGGCGGAgCgcggggGCC-CCGGGGc-CCCGGg -3'
miRNA:   3'- cCCGCUUgG------UGGuGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 147184 0.67 0.705428
Target:  5'- cGGGCGGAaggcguCCcCCGcCCGGcGGUccggCCCGGg -3'
miRNA:   3'- -CCCGCUU------GGuGGU-GGCC-CCAa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 147021 0.74 0.34142
Target:  5'- cGGGCGGGCCggggcuugGCCGCCGaGGUgcgcCCCGGc -3'
miRNA:   3'- -CCCGCUUGG--------UGGUGGCcCCAa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 139009 0.66 0.771197
Target:  5'- cGGCGAuAUCGCCcucCCGGGcGUUCCg-- -3'
miRNA:   3'- cCCGCU-UGGUGGu--GGCCC-CAAGGguc -5'
5494 3' -59.7 NC_001798.1 + 132132 0.7 0.568007
Target:  5'- aGGCGGcCCugcGCCGCCGGGGg--CCGGc -3'
miRNA:   3'- cCCGCUuGG---UGGUGGCCCCaagGGUC- -5'
5494 3' -59.7 NC_001798.1 + 128878 0.66 0.780197
Target:  5'- uGGCGcGGCgAUCGCCGGaGGcgUUCCGGg -3'
miRNA:   3'- cCCGC-UUGgUGGUGGCC-CCa-AGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 127851 0.66 0.785537
Target:  5'- uGGGCcccgccccgccCCACCccgccccacgucACCGGGGgcCCCGGg -3'
miRNA:   3'- -CCCGcuu--------GGUGG------------UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 125295 0.7 0.548632
Target:  5'- aGGCGcGCCACCGCCcgcaccagcucGGGGg--CCAGg -3'
miRNA:   3'- cCCGCuUGGUGGUGG-----------CCCCaagGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.