miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 15387 0.71 0.519978
Target:  5'- cGGCGGAggcgcCCACCGgacCCGGGGUUgcgggUCCGGg -3'
miRNA:   3'- cCCGCUU-----GGUGGU---GGCCCCAA-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 15561 0.68 0.691845
Target:  5'- cGGGCGuuGCCGCCGCCGcggcGGGgaguggcgacgacUCCaCGGa -3'
miRNA:   3'- -CCCGCu-UGGUGGUGGC----CCCa------------AGG-GUC- -5'
5494 3' -59.7 NC_001798.1 + 15827 0.66 0.797817
Target:  5'- aGGC--GCCGCCcgguUCGGGGggCCCGa -3'
miRNA:   3'- cCCGcuUGGUGGu---GGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 15920 0.66 0.797817
Target:  5'- gGGGCGuacgGACCgucaucuaggGCC-CCGGGGg-CCCAa -3'
miRNA:   3'- -CCCGC----UUGG----------UGGuGGCCCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 16138 0.68 0.676212
Target:  5'- gGGGCGGAaUACCauACCGGGGgcaCCgAGc -3'
miRNA:   3'- -CCCGCUUgGUGG--UGGCCCCaa-GGgUC- -5'
5494 3' -59.7 NC_001798.1 + 19717 0.66 0.789073
Target:  5'- uGGCaAACaCACCggGCUGGGGgUCCCGc -3'
miRNA:   3'- cCCGcUUG-GUGG--UGGCCCCaAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 22356 0.66 0.786423
Target:  5'- gGGGCgGGGCCGcgcauaaugcgguuCCACCuGGGGgcggaacCCCGGc -3'
miRNA:   3'- -CCCG-CUUGGU--------------GGUGG-CCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 23857 0.72 0.420898
Target:  5'- uGGGCGAcaGCCGCCccggccuCUGGGGggcgCCCGa -3'
miRNA:   3'- -CCCGCU--UGGUGGu------GGCCCCaa--GGGUc -5'
5494 3' -59.7 NC_001798.1 + 24135 0.67 0.724631
Target:  5'- uGGcGCGGGCCGugccCCACCuGGGGUaCgCCAu -3'
miRNA:   3'- -CC-CGCUUGGU----GGUGG-CCCCAaG-GGUc -5'
5494 3' -59.7 NC_001798.1 + 24171 0.69 0.607213
Target:  5'- cGGCGGGCCGCUucgGCUGGGG--CCUGGc -3'
miRNA:   3'- cCCGCUUGGUGG---UGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24470 0.67 0.715063
Target:  5'- gGGGUGcucGCCGCC-CUGGGGcgCCUg- -3'
miRNA:   3'- -CCCGCu--UGGUGGuGGCCCCaaGGGuc -5'
5494 3' -59.7 NC_001798.1 + 24658 0.67 0.743538
Target:  5'- cGGCGAccugGCgGCCguGCCGGGGcuggccggagCCCGGc -3'
miRNA:   3'- cCCGCU----UGgUGG--UGGCCCCaa--------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 24880 0.67 0.734126
Target:  5'- -cGUGAGCCuggUCGCCGGGGcccugggCCCGGc -3'
miRNA:   3'- ccCGCUUGGu--GGUGGCCCCaa-----GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 25259 0.78 0.196919
Target:  5'- aGGGCGGcuggcgccGCCAgCCGCCGGGG--CCCAGc -3'
miRNA:   3'- -CCCGCU--------UGGU-GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 25583 0.71 0.509618
Target:  5'- cGGGCGAggaccugGCCGCgggccgCGCCGGGGgcgggcccccCCCGGa -3'
miRNA:   3'- -CCCGCU-------UGGUG------GUGGCCCCaa--------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 27491 0.7 0.577761
Target:  5'- gGGGCGGGCgcgggaaaaaaGCCGCgCGGGGgcgCCCGc -3'
miRNA:   3'- -CCCGCUUGg----------UGGUG-GCCCCaa-GGGUc -5'
5494 3' -59.7 NC_001798.1 + 27923 0.79 0.166176
Target:  5'- gGGGUcc-CCGCCGCCGGGG-UCCCGGc -3'
miRNA:   3'- -CCCGcuuGGUGGUGGCCCCaAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28806 0.7 0.539021
Target:  5'- cGGGUccuCCGCCGCCGcGGG--CCCGGg -3'
miRNA:   3'- -CCCGcuuGGUGGUGGC-CCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28862 0.67 0.743538
Target:  5'- aGGGCG-GCCuCgGCCGGcGGagcCCCGGa -3'
miRNA:   3'- -CCCGCuUGGuGgUGGCC-CCaa-GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 28992 0.66 0.797817
Target:  5'- gGGGCGGcgccggccaaccGCgCGCCGCCGcGcGggCCCGGa -3'
miRNA:   3'- -CCCGCU------------UG-GUGGUGGC-CcCaaGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.