miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 3' -59.7 NC_001798.1 + 29042 0.67 0.743538
Target:  5'- cGGCG-ACCGCCccgcGCCGGc-UUCCCGGu -3'
miRNA:   3'- cCCGCuUGGUGG----UGGCCccAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 29382 0.71 0.501205
Target:  5'- gGGGCGGgcaccacucaggGCCGCgccggcggggCGCCGGGGggacUCCCAu -3'
miRNA:   3'- -CCCGCU------------UGGUG----------GUGGCCCCa---AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 29517 0.67 0.734126
Target:  5'- gGGGgGAuucccucccuccGCCcCCGCCGGGGcgCgCGGc -3'
miRNA:   3'- -CCCgCU------------UGGuGGUGGCCCCaaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 29798 0.69 0.635833
Target:  5'- cGGGCGGACCccggccccgagcgGCCGCCGcGGcagaccCCCGGc -3'
miRNA:   3'- -CCCGCUUGG-------------UGGUGGC-CCcaa---GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 30700 0.7 0.548632
Target:  5'- uGGGCGuGACCGCCAgCGGGucGUucagcaccaUCCCGa -3'
miRNA:   3'- -CCCGC-UUGGUGGUgGCCC--CA---------AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 31058 0.68 0.666395
Target:  5'- cGGGCGGgggucgGgCACUaACCGGGGgcUCCCGu -3'
miRNA:   3'- -CCCGCU------UgGUGG-UGGCCCCa-AGGGUc -5'
5494 3' -59.7 NC_001798.1 + 31994 0.7 0.577761
Target:  5'- aGGGCGGcGCCG-CGCCGGGc--CCCGGa -3'
miRNA:   3'- -CCCGCU-UGGUgGUGGCCCcaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 32559 0.68 0.676212
Target:  5'- uGGCGGACCugCugCGGGccgcggCCCc- -3'
miRNA:   3'- cCCGCUUGGugGugGCCCcaa---GGGuc -5'
5494 3' -59.7 NC_001798.1 + 34809 0.71 0.473626
Target:  5'- gGGGCcccgGGGCCcccgcgcuCCGCCGGGGg-CCCGGg -3'
miRNA:   3'- -CCCG----CUUGGu-------GGUGGCCCCaaGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 34856 0.68 0.656552
Target:  5'- cGGGCGGGggacgccuuCCGCCcggcGCCGGGcGgcuaCCCGGg -3'
miRNA:   3'- -CCCGCUU---------GGUGG----UGGCCC-Caa--GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 34971 0.69 0.58755
Target:  5'- gGGGCGG-CCGCCGaggugCGGGGgcCCCu- -3'
miRNA:   3'- -CCCGCUuGGUGGUg----GCCCCaaGGGuc -5'
5494 3' -59.7 NC_001798.1 + 35006 0.65 0.805568
Target:  5'- gGGGCGcACCucggcgGCCAagccccggcccgcCCGGGGgUCCCc- -3'
miRNA:   3'- -CCCGCuUGG------UGGU-------------GGCCCCaAGGGuc -5'
5494 3' -59.7 NC_001798.1 + 35399 0.67 0.705428
Target:  5'- gGGGCcGGCCGCCGgaugcCCGcGGGggCCUAa -3'
miRNA:   3'- -CCCGcUUGGUGGU-----GGC-CCCaaGGGUc -5'
5494 3' -59.7 NC_001798.1 + 36317 0.66 0.771197
Target:  5'- gGGcGCGGGCCGggGCCGGGGcUCgCUGGu -3'
miRNA:   3'- -CC-CGCUUGGUggUGGCCCCaAG-GGUC- -5'
5494 3' -59.7 NC_001798.1 + 36640 0.67 0.734126
Target:  5'- cGGGCGGGggcgcgcuuuccCCGCguCGCCccucGGGUUCCCAa -3'
miRNA:   3'- -CCCGCUU------------GGUG--GUGGc---CCCAAGGGUc -5'
5494 3' -59.7 NC_001798.1 + 39741 0.73 0.387778
Target:  5'- -uGCGGGCCACCuuccccCCGuGcGGUUCCCGGg -3'
miRNA:   3'- ccCGCUUGGUGGu-----GGC-C-CCAAGGGUC- -5'
5494 3' -59.7 NC_001798.1 + 39797 0.68 0.646691
Target:  5'- aGGCGcGACCACaCGCCGGuGGU-CgCGGg -3'
miRNA:   3'- cCCGC-UUGGUG-GUGGCC-CCAaGgGUC- -5'
5494 3' -59.7 NC_001798.1 + 41441 0.73 0.399996
Target:  5'- cGGGCGugggggguccauGCC-CCGCCGGGGggggcggucggcgggCCCAGa -3'
miRNA:   3'- -CCCGCu-----------UGGuGGUGGCCCCaa-------------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 41866 0.69 0.633857
Target:  5'- aGGGC--GCCGCgGCCGGGGaUcagcugcagcaggaCCCAGu -3'
miRNA:   3'- -CCCGcuUGGUGgUGGCCCCaA--------------GGGUC- -5'
5494 3' -59.7 NC_001798.1 + 43478 0.66 0.772102
Target:  5'- gGGGCGGGCgugaggGCCGCCGGGGcauacgugcgcgcgCgCAGg -3'
miRNA:   3'- -CCCGCUUGg-----UGGUGGCCCCaa------------GgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.