miRNA display CGI


Results 41 - 60 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 35538 0.66 0.856745
Target:  5'- cGGCC-GGcgCgGgGCGUUGCCGGcccGGCc -3'
miRNA:   3'- -CCGGuCCuaGgC-CGUAACGGCU---UCGu -5'
5494 5' -56.6 NC_001798.1 + 36329 0.72 0.529853
Target:  5'- gGGCCGGGGcucgCUGGUcc-GCCGAAGUAa -3'
miRNA:   3'- -CCGGUCCUa---GGCCGuaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 36480 0.66 0.877606
Target:  5'- cGCCGGGAgggggcgCCGGCGcgacgcgggcgGCCG-GGCGg -3'
miRNA:   3'- cCGGUCCUa------GGCCGUaa---------CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 37191 0.7 0.65546
Target:  5'- cGCCAGGcgCCGcgccgaacgacgggcGCGgcGCCGGAGCu -3'
miRNA:   3'- cCGGUCCuaGGC---------------CGUaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 39640 0.71 0.64115
Target:  5'- uGGUguGGAgUCGGCGccGCCGggGCc -3'
miRNA:   3'- -CCGguCCUaGGCCGUaaCGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 39870 0.69 0.751344
Target:  5'- aGGCUucgGGGGUgCCGGCGUccUCGggGCGg -3'
miRNA:   3'- -CCGG---UCCUA-GGCCGUAacGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 41090 0.69 0.751344
Target:  5'- -aCCAGGGUCUGGCGUUGaaCGGauAGCu -3'
miRNA:   3'- ccGGUCCUAGGCCGUAACg-GCU--UCGu -5'
5494 5' -56.6 NC_001798.1 + 43011 0.66 0.886029
Target:  5'- cGGCCAGGccgcCCGGgGggaGCgCGggGCc -3'
miRNA:   3'- -CCGGUCCua--GGCCgUaa-CG-GCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 43080 0.68 0.79797
Target:  5'- cGCCGGGcUCgGGCGccGCCGccGCGu -3'
miRNA:   3'- cCGGUCCuAGgCCGUaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 43474 0.67 0.824221
Target:  5'- cGCgGGGG-CgGGCGUgagggccGCCGggGCAu -3'
miRNA:   3'- cCGgUCCUaGgCCGUAa------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 43713 0.72 0.56981
Target:  5'- uGGCCAGGcgCgGGgg--GCUGAAGCAc -3'
miRNA:   3'- -CCGGUCCuaGgCCguaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 46765 0.66 0.886029
Target:  5'- cGGCCcauucGGAgucCCcGCAUucUGCCGggGUAa -3'
miRNA:   3'- -CCGGu----CCUa--GGcCGUA--ACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 51237 0.68 0.760915
Target:  5'- cGGCCAGGAgccagUCCGuucGCGgacGCCGGgacAGCGc -3'
miRNA:   3'- -CCGGUCCU-----AGGC---CGUaa-CGGCU---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 55998 0.67 0.815634
Target:  5'- gGGCgAGGggCUGGUAggcgggucCCGAAGCAc -3'
miRNA:   3'- -CCGgUCCuaGGCCGUaac-----GGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 56249 0.66 0.871816
Target:  5'- cGGCCGGGc-CCGGCc---CCGGAGUu -3'
miRNA:   3'- -CCGGUCCuaGGCCGuaacGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 56510 0.69 0.702098
Target:  5'- cGGCaggguggagcGGAUCgUGGCggUGCCGggGCGc -3'
miRNA:   3'- -CCGgu--------CCUAG-GCCGuaACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 58120 0.69 0.740695
Target:  5'- gGGCCcggcgucuGGGUCCuugugaaGGCGgcGCCGGAGCc -3'
miRNA:   3'- -CCGGu-------CCUAGG-------CCGUaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 59476 0.66 0.892801
Target:  5'- cGGUgAGGcGUUCGGCcaccacccGUUGCCGucagGGCAa -3'
miRNA:   3'- -CCGgUCC-UAGGCCG--------UAACGGCu---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 64514 0.66 0.871816
Target:  5'- uGGgCGGGGUCCaggcaaGGCAggGCCuGGGCc -3'
miRNA:   3'- -CCgGUCCUAGG------CCGUaaCGGcUUCGu -5'
5494 5' -56.6 NC_001798.1 + 65744 0.75 0.383449
Target:  5'- gGGCCGGcauGAUgCUGGCggUGCCGggGCu -3'
miRNA:   3'- -CCGGUC---CUA-GGCCGuaACGGCuuCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.