miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 22131 0.69 0.741668
Target:  5'- cGGCCccuuuGGggCCGGCGgggGCCaacgGGAGCGc -3'
miRNA:   3'- -CCGGu----CCuaGGCCGUaa-CGG----CUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 23713 0.67 0.827607
Target:  5'- cGGCCGGGcggccCCGGCGggucgagcuggacGCCGAcGCGg -3'
miRNA:   3'- -CCGGUCCua---GGCCGUaa-----------CGGCUuCGU- -5'
5494 5' -56.6 NC_001798.1 + 23808 0.67 0.847309
Target:  5'- uGGCCcGGggCCGGCcccccgcccCCGggGCGc -3'
miRNA:   3'- -CCGGuCCuaGGCCGuaac-----GGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 24649 0.66 0.871816
Target:  5'- gGGCUucgacGGcGAcCUGGCGgccgUGCCGggGCu -3'
miRNA:   3'- -CCGG-----UC-CUaGGCCGUa---ACGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 24897 0.7 0.651374
Target:  5'- gGGCCcuGGGcCCGGCGcUGCCGcgGAGCc -3'
miRNA:   3'- -CCGGu-CCUaGGCCGUaACGGC--UUCGu -5'
5494 5' -56.6 NC_001798.1 + 26555 0.68 0.779707
Target:  5'- cGCCGcGGggCUGGCcacgccGCCGAGGCGc -3'
miRNA:   3'- cCGGU-CCuaGGCCGuaa---CGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 26819 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26849 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26879 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26924 0.68 0.79797
Target:  5'- gGGCgGGGGUCgGGCGggcgggGUCGGgcgGGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa----CGGCU---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 26968 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26998 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 27934 0.71 0.630918
Target:  5'- cGCCGGGGUcCCGGCGccgGCCGcgccccGGCGc -3'
miRNA:   3'- cCGGUCCUA-GGCCGUaa-CGGCu-----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 28649 0.69 0.735815
Target:  5'- gGGCCGaccgcgaccGGuUCCGGCGccgcguggcggcgGCCGAGGCGg -3'
miRNA:   3'- -CCGGU---------CCuAGGCCGUaa-----------CGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 30775 0.66 0.892801
Target:  5'- cGGCCGugcGGG-CCGGCAcgGCCGuGGa- -3'
miRNA:   3'- -CCGGU---CCUaGGCCGUaaCGGCuUCgu -5'
5494 5' -56.6 NC_001798.1 + 30960 0.69 0.722037
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 30993 0.69 0.722037
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 31048 0.7 0.681923
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCAc -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 31146 0.69 0.702098
Target:  5'- cGGCgCGGGGg-CGGCggUGCgGggGCGa -3'
miRNA:   3'- -CCG-GUCCUagGCCGuaACGgCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 35393 0.68 0.806881
Target:  5'- gGGCguGGggCCGGCc--GCCGGAuGCc -3'
miRNA:   3'- -CCGguCCuaGGCCGuaaCGGCUU-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.