miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 83839 0.66 0.890793
Target:  5'- gGGCCGguccccguccgggcGGcgCUGGCGggcCCGAGGCGg -3'
miRNA:   3'- -CCGGU--------------CCuaGGCCGUaacGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 43011 0.66 0.886029
Target:  5'- cGGCCAGGccgcCCGGgGggaGCgCGggGCc -3'
miRNA:   3'- -CCGGUCCua--GGCCgUaa-CG-GCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 135229 0.66 0.886029
Target:  5'- aGGCCGGGcugCCGGaa--GCCcgGggGCGg -3'
miRNA:   3'- -CCGGUCCua-GGCCguaaCGG--CuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 46765 0.66 0.886029
Target:  5'- cGGCCcauucGGAgucCCcGCAUucUGCCGggGUAa -3'
miRNA:   3'- -CCGGu----CCUa--GGcCGUA--ACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 24649 0.66 0.871816
Target:  5'- gGGCUucgacGGcGAcCUGGCGgccgUGCCGggGCu -3'
miRNA:   3'- -CCGG-----UC-CUaGGCCGUa---ACGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 36480 0.66 0.877606
Target:  5'- cGCCGGGAgggggcgCCGGCGcgacgcgggcgGCCG-GGCGg -3'
miRNA:   3'- cCGGUCCUa------GGCCGUaa---------CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 2125 0.66 0.879032
Target:  5'- cGGCCAGGuccucgcCCGGCAgcGgCG-AGUAg -3'
miRNA:   3'- -CCGGUCCua-----GGCCGUaaCgGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 111022 0.66 0.879032
Target:  5'- cGGCCAGGcGUCCGug---GCCGgcGUAc -3'
miRNA:   3'- -CCGGUCC-UAGGCcguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 105386 0.66 0.885339
Target:  5'- cGGCCuGGAgggCGGCGUUcuccaggGCCGccGCGg -3'
miRNA:   3'- -CCGGuCCUag-GCCGUAA-------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 43474 0.67 0.824221
Target:  5'- cGCgGGGG-CgGGCGUgagggccGCCGggGCAu -3'
miRNA:   3'- cCGgUCCUaGgCCGUAa------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 23713 0.67 0.827607
Target:  5'- cGGCCGGGcggccCCGGCGggucgagcuggacGCCGAcGCGg -3'
miRNA:   3'- -CCGGUCCua---GGCCGUaa-----------CGGCUuCGU- -5'
5494 5' -56.6 NC_001798.1 + 80533 0.67 0.832632
Target:  5'- uGGCCAGacgcucGGcCCGGCGgggggGCgCGAGGCGu -3'
miRNA:   3'- -CCGGUC------CUaGGCCGUaa---CG-GCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 26819 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26849 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26879 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26968 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26998 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 154176 0.67 0.832632
Target:  5'- aGGCCcGGAgCCGGagcgcGUCGggGCGg -3'
miRNA:   3'- -CCGGuCCUaGGCCguaa-CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 23808 0.67 0.847309
Target:  5'- uGGCCcGGggCCGGCcccccgcccCCGggGCGc -3'
miRNA:   3'- -CCGGuCCuaGGCCGuaac-----GGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 75844 0.67 0.824221
Target:  5'- cGGaUCAGGcgCUGGCccaguUUGCcCGggGCGa -3'
miRNA:   3'- -CC-GGUCCuaGGCCGu----AACG-GCuuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.