miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 2610 0.71 0.630918
Target:  5'- gGGCgCGGGGcgccgcCCGGCGgcgcccugGCCGggGCGg -3'
miRNA:   3'- -CCG-GUCCUa-----GGCCGUaa------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 27934 0.71 0.630918
Target:  5'- cGCCGGGGUcCCGGCGccgGCCGcgccccGGCGc -3'
miRNA:   3'- cCGGUCCUA-GGCCGUaa-CGGCu-----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 39640 0.71 0.64115
Target:  5'- uGGUguGGAgUCGGCGccGCCGggGCc -3'
miRNA:   3'- -CCGguCCUaGGCCGUaaCGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 6387 0.7 0.651374
Target:  5'- gGGCCGGGGggCCGGggg-GCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa-GGCCguaaCGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 24897 0.7 0.651374
Target:  5'- gGGCCcuGGGcCCGGCGcUGCCGcgGAGCc -3'
miRNA:   3'- -CCGGu-CCUaGGCCGUaACGGC--UUCGu -5'
5494 5' -56.6 NC_001798.1 + 37191 0.7 0.65546
Target:  5'- cGCCAGGcgCCGcgccgaacgacgggcGCGgcGCCGGAGCu -3'
miRNA:   3'- cCGGUCCuaGGC---------------CGUaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 108115 0.7 0.668717
Target:  5'- cGGUCuguggguggugaugGGGGUCCuggugGGCGUUGCCGggGg- -3'
miRNA:   3'- -CCGG--------------UCCUAGG-----CCGUAACGGCuuCgu -5'
5494 5' -56.6 NC_001798.1 + 97600 0.7 0.671769
Target:  5'- gGGCgCAGGggCCGGaga-GCUGggGCGa -3'
miRNA:   3'- -CCG-GUCCuaGGCCguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 31048 0.7 0.681923
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCAc -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 56510 0.69 0.702098
Target:  5'- cGGCaggguggagcGGAUCgUGGCggUGCCGggGCGc -3'
miRNA:   3'- -CCGgu--------CCUAG-GCCGuaACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 31146 0.69 0.702098
Target:  5'- cGGCgCGGGGg-CGGCggUGCgGggGCGa -3'
miRNA:   3'- -CCG-GUCCUagGCCGuaACGgCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 95692 0.69 0.702098
Target:  5'- cGGCgGGGGcggCCGGCGUcGCCcGaAAGCGg -3'
miRNA:   3'- -CCGgUCCUa--GGCCGUAaCGG-C-UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 119881 0.69 0.712102
Target:  5'- aGGCCGGGGggaucCCGGuCGggGCCGccAGGUAa -3'
miRNA:   3'- -CCGGUCCUa----GGCC-GUaaCGGC--UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 86894 0.69 0.712102
Target:  5'- cGCCGGGAaccCCGGCGUggagcGCCG-GGCc -3'
miRNA:   3'- cCGGUCCUa--GGCCGUAa----CGGCuUCGu -5'
5494 5' -56.6 NC_001798.1 + 146490 0.69 0.716084
Target:  5'- gGGCCGGGccgggCCGGCAacgccccgcgccgGCCGcGGCGg -3'
miRNA:   3'- -CCGGUCCua---GGCCGUaa-----------CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 30993 0.69 0.722037
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 30960 0.69 0.722037
Target:  5'- gGGCgGGGGUCgGGCGgggGUCG-GGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa-CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 101847 0.69 0.731896
Target:  5'- aGGCguGGGUcCCGGCGgcgGCgGAGGgGg -3'
miRNA:   3'- -CCGguCCUA-GGCCGUaa-CGgCUUCgU- -5'
5494 5' -56.6 NC_001798.1 + 151610 0.69 0.731896
Target:  5'- cGGCCGGGggCCGG----GCCgGggGCGu -3'
miRNA:   3'- -CCGGUCCuaGGCCguaaCGG-CuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 93253 0.69 0.735815
Target:  5'- gGGCCAGGaaacgcccgcggcccGcgCCGGCGccGUCGggGCGu -3'
miRNA:   3'- -CCGGUCC---------------Ua-GGCCGUaaCGGCuuCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.