miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 76850 0.66 0.864385
Target:  5'- gGGCUaaAGGcguGUCCGGCcgUGCU--GGCGa -3'
miRNA:   3'- -CCGG--UCC---UAGGCCGuaACGGcuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 126263 0.66 0.864385
Target:  5'- cGCCGGGcGUCCGGac--GCCcAAGCGg -3'
miRNA:   3'- cCGGUCC-UAGGCCguaaCGGcUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 66226 0.66 0.856745
Target:  5'- gGGCCAGGAUCauuagcugGGCcucgUGUucgCGAAGCc -3'
miRNA:   3'- -CCGGUCCUAGg-------CCGua--ACG---GCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 19866 0.66 0.856745
Target:  5'- aGGCCAGaGcGUUCGGCGgaGCUGGuaucGGCGa -3'
miRNA:   3'- -CCGGUC-C-UAGGCCGUaaCGGCU----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 85297 0.66 0.856745
Target:  5'- gGGCCGGGGUCCGcccGCGgcccGCCc--GCAg -3'
miRNA:   3'- -CCGGUCCUAGGC---CGUaa--CGGcuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 95200 0.66 0.856745
Target:  5'- aGGCCGGGAaCUGGgcCAgccUGCUGGgcGGCAa -3'
miRNA:   3'- -CCGGUCCUaGGCC--GUa--ACGGCU--UCGU- -5'
5494 5' -56.6 NC_001798.1 + 107877 0.66 0.856745
Target:  5'- gGGCCAGGG-CUGGCA---CCGuaucAGCAc -3'
miRNA:   3'- -CCGGUCCUaGGCCGUaacGGCu---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 35538 0.66 0.856745
Target:  5'- cGGCC-GGcgCgGgGCGUUGCCGGcccGGCc -3'
miRNA:   3'- -CCGGuCCuaGgC-CGUAACGGCU---UCGu -5'
5494 5' -56.6 NC_001798.1 + 1481 0.66 0.855969
Target:  5'- cGCCGGGcgCCauGGCGUcGCCcgcgcccGAGGCGg -3'
miRNA:   3'- cCGGUCCuaGG--CCGUAaCGG-------CUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 121800 0.67 0.848901
Target:  5'- gGGCCGGG--CCGGCcGUUGUCG--GCAc -3'
miRNA:   3'- -CCGGUCCuaGGCCG-UAACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 23808 0.67 0.847309
Target:  5'- uGGCCcGGggCCGGCcccccgcccCCGggGCGc -3'
miRNA:   3'- -CCGGuCCuaGGCCGuaac-----GGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 154176 0.67 0.832632
Target:  5'- aGGCCcGGAgCCGGagcgcGUCGggGCGg -3'
miRNA:   3'- -CCGGuCCUaGGCCguaa-CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 80533 0.67 0.832632
Target:  5'- uGGCCAGacgcucGGcCCGGCGgggggGCgCGAGGCGu -3'
miRNA:   3'- -CCGGUC------CUaGGCCGUaa---CG-GCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 26819 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26849 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26879 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26968 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 26998 0.67 0.832632
Target:  5'- gGGCgGGGGUCgGGCgg-GCgGggGUc -3'
miRNA:   3'- -CCGgUCCUAGgCCGuaaCGgCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 23713 0.67 0.827607
Target:  5'- cGGCCGGGcggccCCGGCGggucgagcuggacGCCGAcGCGg -3'
miRNA:   3'- -CCGGUCCua---GGCCGUaa-----------CGGCUuCGU- -5'
5494 5' -56.6 NC_001798.1 + 75844 0.67 0.824221
Target:  5'- cGGaUCAGGcgCUGGCccaguUUGCcCGggGCGa -3'
miRNA:   3'- -CC-GGUCCuaGGCCGu----AACG-GCuuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.