miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 75844 0.67 0.824221
Target:  5'- cGGaUCAGGcgCUGGCccaguUUGCcCGggGCGa -3'
miRNA:   3'- -CC-GGUCCuaGGCCGu----AACG-GCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 96961 0.67 0.824221
Target:  5'- uGGaCCAGGcgCUGGCGcgGaCCGcGGCGg -3'
miRNA:   3'- -CC-GGUCCuaGGCCGUaaC-GGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 149170 0.67 0.815634
Target:  5'- cGGCCGGuGGUCCGGUGgggGgCGGcuuccuucgGGCAg -3'
miRNA:   3'- -CCGGUC-CUAGGCCGUaa-CgGCU---------UCGU- -5'
5494 5' -56.6 NC_001798.1 + 74400 0.67 0.815634
Target:  5'- gGGCCGuGGcgCCGGCGgaccUGaCCGccGCGg -3'
miRNA:   3'- -CCGGU-CCuaGGCCGUa---AC-GGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 55998 0.67 0.815634
Target:  5'- gGGCgAGGggCUGGUAggcgggucCCGAAGCAc -3'
miRNA:   3'- -CCGgUCCuaGGCCGUaac-----GGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 35393 0.68 0.806881
Target:  5'- gGGCguGGggCCGGCc--GCCGGAuGCc -3'
miRNA:   3'- -CCGguCCuaGGCCGuaaCGGCUU-CGu -5'
5494 5' -56.6 NC_001798.1 + 148085 0.68 0.806881
Target:  5'- gGGCCGGGggCCGGg---GCCGcuagggaaagguAGGCAc -3'
miRNA:   3'- -CCGGUCCuaGGCCguaaCGGC------------UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 150841 0.68 0.806881
Target:  5'- cGCCAGGGggcgCCGGUcggGUCGcGGCGg -3'
miRNA:   3'- cCGGUCCUa---GGCCGuaaCGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 43080 0.68 0.79797
Target:  5'- cGCCGGGcUCgGGCGccGCCGccGCGu -3'
miRNA:   3'- cCGGUCCuAGgCCGUaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 26924 0.68 0.79797
Target:  5'- gGGCgGGGGUCgGGCGggcgggGUCGGgcgGGCGg -3'
miRNA:   3'- -CCGgUCCUAGgCCGUaa----CGGCU---UCGU- -5'
5494 5' -56.6 NC_001798.1 + 3089 0.68 0.788909
Target:  5'- -uCCAGGAUCCcgcGGCAggcgGCC-AGGCAc -3'
miRNA:   3'- ccGGUCCUAGG---CCGUaa--CGGcUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 135289 0.68 0.783405
Target:  5'- cGGCCGcccccucggagcccuGGGcCCgGGCcgUGCUGGAGCGc -3'
miRNA:   3'- -CCGGU---------------CCUaGG-CCGuaACGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 6345 0.68 0.779707
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGg- -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgu -5'
5494 5' -56.6 NC_001798.1 + 125323 0.68 0.779707
Target:  5'- gGGCCAGGAacUCCaGCuugGCCGuguGGUc -3'
miRNA:   3'- -CCGGUCCU--AGGcCGuaaCGGCu--UCGu -5'
5494 5' -56.6 NC_001798.1 + 26555 0.68 0.779707
Target:  5'- cGCCGcGGggCUGGCcacgccGCCGAGGCGc -3'
miRNA:   3'- cCGGU-CCuaGGCCGuaa---CGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 152992 0.68 0.779707
Target:  5'- -aCCGGGAagCCGGCGcggggcggucGCCGggGCGg -3'
miRNA:   3'- ccGGUCCUa-GGCCGUaa--------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 135773 0.68 0.760915
Target:  5'- cGGCCGGccgCCGGCcc-GCCGGAGgAg -3'
miRNA:   3'- -CCGGUCcuaGGCCGuaaCGGCUUCgU- -5'
5494 5' -56.6 NC_001798.1 + 84107 0.68 0.760915
Target:  5'- cGGCCGGGcGUCCag----GCCGAGGCGc -3'
miRNA:   3'- -CCGGUCC-UAGGccguaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 79367 0.68 0.760915
Target:  5'- cGCCAGGG-CCGGCg--GCCaGAcgGGCGc -3'
miRNA:   3'- cCGGUCCUaGGCCGuaaCGG-CU--UCGU- -5'
5494 5' -56.6 NC_001798.1 + 51237 0.68 0.760915
Target:  5'- cGGCCAGGAgccagUCCGuucGCGgacGCCGGgacAGCGc -3'
miRNA:   3'- -CCGGUCCU-----AGGC---CGUaa-CGGCU---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.