miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 66849 0.78 0.272862
Target:  5'- aGGCCGGGGuuUCCGGggaGUcGCCGggGCGc -3'
miRNA:   3'- -CCGGUCCU--AGGCCg--UAaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 75455 0.75 0.383449
Target:  5'- aGGCCGGGGUggCCGGCccgGCCGcGGCc -3'
miRNA:   3'- -CCGGUCCUA--GGCCGuaaCGGCuUCGu -5'
5494 5' -56.6 NC_001798.1 + 65744 0.75 0.383449
Target:  5'- gGGCCGGcauGAUgCUGGCggUGCCGggGCu -3'
miRNA:   3'- -CCGGUC---CUA-GGCCGuaACGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 154048 0.74 0.453457
Target:  5'- cGCCGGGG-CgCGGCAcgGCUGGAGCGc -3'
miRNA:   3'- cCGGUCCUaG-GCCGUaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 154072 0.73 0.48145
Target:  5'- nGCCGGGG-CgCGGCAcgGCUGGAGCGc -3'
miRNA:   3'- cCGGUCCUaG-GCCGUaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 152249 0.73 0.509283
Target:  5'- gGGCCGGGGUCCGcccgggagcucguGCcggGCCGggGUu -3'
miRNA:   3'- -CCGGUCCUAGGC-------------CGuaaCGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 115604 0.73 0.510255
Target:  5'- cGGCCGGG-UCCGGUggGUcGCCGAGuGCc -3'
miRNA:   3'- -CCGGUCCuAGGCCG--UAaCGGCUU-CGu -5'
5494 5' -56.6 NC_001798.1 + 3025 0.73 0.520018
Target:  5'- gGGCCGGGcUCCGGCca-GCCccGGCAc -3'
miRNA:   3'- -CCGGUCCuAGGCCGuaaCGGcuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 36329 0.72 0.529853
Target:  5'- gGGCCGGGGcucgCUGGUcc-GCCGAAGUAa -3'
miRNA:   3'- -CCGGUCCUa---GGCCGuaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 132146 0.72 0.529853
Target:  5'- cGCCGGGggCCGGCg--GgCGggGCGc -3'
miRNA:   3'- cCGGUCCuaGGCCGuaaCgGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 137472 0.72 0.539755
Target:  5'- cGGCgGGGGUUgGGgAgggggGCCGggGCAg -3'
miRNA:   3'- -CCGgUCCUAGgCCgUaa---CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 99570 0.72 0.549719
Target:  5'- uGGCCuGGGaCUGGg--UGCCGAAGCGa -3'
miRNA:   3'- -CCGGuCCUaGGCCguaACGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 2410 0.72 0.55974
Target:  5'- cGGCCgaGGGcgCCGGCGUgugGCUGGgccccGGCGg -3'
miRNA:   3'- -CCGG--UCCuaGGCCGUAa--CGGCU-----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 43713 0.72 0.56981
Target:  5'- uGGCCAGGcgCgGGgg--GCUGAAGCAc -3'
miRNA:   3'- -CCGGUCCuaGgCCguaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 20290 0.72 0.56981
Target:  5'- cGGCCccaggcGGGUCCGGCAguaGCCcauGAGGUAg -3'
miRNA:   3'- -CCGGu-----CCUAGGCCGUaa-CGG---CUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 96997 0.72 0.56981
Target:  5'- gGGCCAGGG-CCGGCccgccgcccGCCGAuAGCu -3'
miRNA:   3'- -CCGGUCCUaGGCCGuaa------CGGCU-UCGu -5'
5494 5' -56.6 NC_001798.1 + 89425 0.72 0.579925
Target:  5'- cGGCCGGGcgCUugGGCGccuccUUGUCGAGGCc -3'
miRNA:   3'- -CCGGUCCuaGG--CCGU-----AACGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 4086 0.72 0.579925
Target:  5'- cGCgGGGGUCCGG----GCCGggGCGg -3'
miRNA:   3'- cCGgUCCUAGGCCguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 97470 0.71 0.601278
Target:  5'- cGGCUGGGggCCGGCGgcgcgaccggggggGCCGAGGa- -3'
miRNA:   3'- -CCGGUCCuaGGCCGUaa------------CGGCUUCgu -5'
5494 5' -56.6 NC_001798.1 + 147026 0.71 0.610465
Target:  5'- gGGCCGGGGcUUGGCc--GCCGAGGUg -3'
miRNA:   3'- -CCGGUCCUaGGCCGuaaCGGCUUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.