miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 1481 0.66 0.855969
Target:  5'- cGCCGGGcgCCauGGCGUcGCCcgcgcccGAGGCGg -3'
miRNA:   3'- cCGGUCCuaGG--CCGUAaCGG-------CUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 2125 0.66 0.879032
Target:  5'- cGGCCAGGuccucgcCCGGCAgcGgCG-AGUAg -3'
miRNA:   3'- -CCGGUCCua-----GGCCGUaaCgGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 2410 0.72 0.55974
Target:  5'- cGGCCgaGGGcgCCGGCGUgugGCUGGgccccGGCGg -3'
miRNA:   3'- -CCGG--UCCuaGGCCGUAa--CGGCU-----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 2610 0.71 0.630918
Target:  5'- gGGCgCGGGGcgccgcCCGGCGgcgcccugGCCGggGCGg -3'
miRNA:   3'- -CCG-GUCCUa-----GGCCGUaa------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 3025 0.73 0.520018
Target:  5'- gGGCCGGGcUCCGGCca-GCCccGGCAc -3'
miRNA:   3'- -CCGGUCCuAGGCCGuaaCGGcuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 3089 0.68 0.788909
Target:  5'- -uCCAGGAUCCcgcGGCAggcgGCC-AGGCAc -3'
miRNA:   3'- ccGGUCCUAGG---CCGUaa--CGGcUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 4086 0.72 0.579925
Target:  5'- cGCgGGGGUCCGG----GCCGggGCGg -3'
miRNA:   3'- cCGgUCCUAGGCCguaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 4112 0.69 0.741668
Target:  5'- cGGCCcuGGG-CgGGCucgGCCGggGCGc -3'
miRNA:   3'- -CCGGu-CCUaGgCCGuaaCGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 4889 0.66 0.871816
Target:  5'- cGGCU-GGAUCCGGagau-CCGggGCc -3'
miRNA:   3'- -CCGGuCCUAGGCCguaacGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 6267 0.69 0.751344
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 6306 0.69 0.751344
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 6345 0.68 0.779707
Target:  5'- gGGCCGGGGggacgggCCGGgGggacggGCCGggGg- -3'
miRNA:   3'- -CCGGUCCUa------GGCCgUaa----CGGCuuCgu -5'
5494 5' -56.6 NC_001798.1 + 6387 0.7 0.651374
Target:  5'- gGGCCGGGGggCCGGggg-GCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUa-GGCCguaaCGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 6544 0.66 0.864385
Target:  5'- gGGCCGGGGggaCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUag-GCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 6586 0.66 0.864385
Target:  5'- gGGCCGGGGggaCGGgGggacggGCCGggGgGa -3'
miRNA:   3'- -CCGGUCCUag-GCCgUaa----CGGCuuCgU- -5'
5494 5' -56.6 NC_001798.1 + 8789 0.66 0.892801
Target:  5'- uGCCGGGA-CgGGCGagGCCGcgGGGUAa -3'
miRNA:   3'- cCGGUCCUaGgCCGUaaCGGC--UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 8881 0.66 0.892801
Target:  5'- cGGaaGGGcgCUGGCGgaggGCgGAGGCGa -3'
miRNA:   3'- -CCggUCCuaGGCCGUaa--CGgCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 12326 0.66 0.871816
Target:  5'- cGGCCGGGcAUaCCGGgAUcggacggGUCGAGGUg -3'
miRNA:   3'- -CCGGUCC-UA-GGCCgUAa------CGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 19866 0.66 0.856745
Target:  5'- aGGCCAGaGcGUUCGGCGgaGCUGGuaucGGCGa -3'
miRNA:   3'- -CCGGUC-C-UAGGCCGUaaCGGCU----UCGU- -5'
5494 5' -56.6 NC_001798.1 + 20290 0.72 0.56981
Target:  5'- cGGCCccaggcGGGUCCGGCAguaGCCcauGAGGUAg -3'
miRNA:   3'- -CCGGu-----CCUAGGCCGUaa-CGG---CUUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.