miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5494 5' -56.6 NC_001798.1 + 154176 0.67 0.832632
Target:  5'- aGGCCcGGAgCCGGagcgcGUCGggGCGg -3'
miRNA:   3'- -CCGGuCCUaGGCCguaa-CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 154072 0.73 0.48145
Target:  5'- nGCCGGGG-CgCGGCAcgGCUGGAGCGc -3'
miRNA:   3'- cCGGUCCUaG-GCCGUaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 154048 0.74 0.453457
Target:  5'- cGCCGGGG-CgCGGCAcgGCUGGAGCGc -3'
miRNA:   3'- cCGGUCCUaG-GCCGUaaCGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 152992 0.68 0.779707
Target:  5'- -aCCGGGAagCCGGCGcggggcggucGCCGggGCGg -3'
miRNA:   3'- ccGGUCCUa-GGCCGUaa--------CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 152249 0.73 0.509283
Target:  5'- gGGCCGGGGUCCGcccgggagcucguGCcggGCCGggGUu -3'
miRNA:   3'- -CCGGUCCUAGGC-------------CGuaaCGGCuuCGu -5'
5494 5' -56.6 NC_001798.1 + 151610 0.69 0.731896
Target:  5'- cGGCCGGGggCCGG----GCCgGggGCGu -3'
miRNA:   3'- -CCGGUCCuaGGCCguaaCGG-CuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 150841 0.68 0.806881
Target:  5'- cGCCAGGGggcgCCGGUcggGUCGcGGCGg -3'
miRNA:   3'- cCGGUCCUa---GGCCGuaaCGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 149170 0.67 0.815634
Target:  5'- cGGCCGGuGGUCCGGUGgggGgCGGcuuccuucgGGCAg -3'
miRNA:   3'- -CCGGUC-CUAGGCCGUaa-CgGCU---------UCGU- -5'
5494 5' -56.6 NC_001798.1 + 148085 0.68 0.806881
Target:  5'- gGGCCGGGggCCGGg---GCCGcuagggaaagguAGGCAc -3'
miRNA:   3'- -CCGGUCCuaGGCCguaaCGGC------------UUCGU- -5'
5494 5' -56.6 NC_001798.1 + 147026 0.71 0.610465
Target:  5'- gGGCCGGGGcUUGGCc--GCCGAGGUg -3'
miRNA:   3'- -CCGGUCCUaGGCCGuaaCGGCUUCGu -5'
5494 5' -56.6 NC_001798.1 + 146490 0.69 0.716084
Target:  5'- gGGCCGGGccgggCCGGCAacgccccgcgccgGCCGcGGCGg -3'
miRNA:   3'- -CCGGUCCua---GGCCGUaa-----------CGGCuUCGU- -5'
5494 5' -56.6 NC_001798.1 + 137472 0.72 0.539755
Target:  5'- cGGCgGGGGUUgGGgAgggggGCCGggGCAg -3'
miRNA:   3'- -CCGgUCCUAGgCCgUaa---CGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 135773 0.68 0.760915
Target:  5'- cGGCCGGccgCCGGCcc-GCCGGAGgAg -3'
miRNA:   3'- -CCGGUCcuaGGCCGuaaCGGCUUCgU- -5'
5494 5' -56.6 NC_001798.1 + 135289 0.68 0.783405
Target:  5'- cGGCCGcccccucggagcccuGGGcCCgGGCcgUGCUGGAGCGc -3'
miRNA:   3'- -CCGGU---------------CCUaGG-CCGuaACGGCUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 135229 0.66 0.886029
Target:  5'- aGGCCGGGcugCCGGaa--GCCcgGggGCGg -3'
miRNA:   3'- -CCGGUCCua-GGCCguaaCGG--CuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 132146 0.72 0.529853
Target:  5'- cGCCGGGggCCGGCg--GgCGggGCGc -3'
miRNA:   3'- cCGGUCCuaGGCCGuaaCgGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 126263 0.66 0.864385
Target:  5'- cGCCGGGcGUCCGGac--GCCcAAGCGg -3'
miRNA:   3'- cCGGUCC-UAGGCCguaaCGGcUUCGU- -5'
5494 5' -56.6 NC_001798.1 + 125323 0.68 0.779707
Target:  5'- gGGCCAGGAacUCCaGCuugGCCGuguGGUc -3'
miRNA:   3'- -CCGGUCCU--AGGcCGuaaCGGCu--UCGu -5'
5494 5' -56.6 NC_001798.1 + 121800 0.67 0.848901
Target:  5'- gGGCCGGG--CCGGCcGUUGUCG--GCAc -3'
miRNA:   3'- -CCGGUCCuaGGCCG-UAACGGCuuCGU- -5'
5494 5' -56.6 NC_001798.1 + 119881 0.69 0.712102
Target:  5'- aGGCCGGGGggaucCCGGuCGggGCCGccAGGUAa -3'
miRNA:   3'- -CCGGUCCUa----GGCC-GUaaCGGC--UUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.