miRNA display CGI


Results 41 - 60 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 143986 0.66 0.80913
Target:  5'- gGGUAacaauuuuuaaccgcCGCCAGCACGuuCCGuagacucgGAGGCa -3'
miRNA:   3'- aCCAU---------------GCGGUCGUGCucGGUg-------CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 132599 0.66 0.805655
Target:  5'- gUGGUgaGCGCCAGCGgGcAGUgGCc-GGCa -3'
miRNA:   3'- -ACCA--UGCGGUCGUgC-UCGgUGcuCCG- -5'
5496 3' -58.3 NC_001798.1 + 38252 0.66 0.805655
Target:  5'- uUGGU-CGUguGCAgGGcguuuucggccuGCCACGuGGCa -3'
miRNA:   3'- -ACCAuGCGguCGUgCU------------CGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 78999 0.66 0.805655
Target:  5'- gGGUuccGCGCCAuGCACGAGCagcuGCGc-GCc -3'
miRNA:   3'- aCCA---UGCGGU-CGUGCUCGg---UGCucCG- -5'
5496 3' -58.3 NC_001798.1 + 56539 0.66 0.804782
Target:  5'- cGGgGCGCCcGCACGAuGUCugGGacgcgacGGCc -3'
miRNA:   3'- aCCaUGCGGuCGUGCU-CGGugCU-------CCG- -5'
5496 3' -58.3 NC_001798.1 + 2049 0.66 0.796861
Target:  5'- aGGgcCGCCAGCAgGcaggacagcccGCCGCGcucGGCg -3'
miRNA:   3'- aCCauGCGGUCGUgCu----------CGGUGCu--CCG- -5'
5496 3' -58.3 NC_001798.1 + 61453 0.66 0.796861
Target:  5'- cUGGUgaaGCGCCGGgGCcuccGGGCCcCGgaGGGCu -3'
miRNA:   3'- -ACCA---UGCGGUCgUG----CUCGGuGC--UCCG- -5'
5496 3' -58.3 NC_001798.1 + 73960 0.66 0.796861
Target:  5'- gUGG-ACGC--GCGCG-GCCGCG-GGCu -3'
miRNA:   3'- -ACCaUGCGguCGUGCuCGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 95302 0.66 0.796861
Target:  5'- uUGuGUGCG-CGGCGuCGAGUCucggggGCGGGGCc -3'
miRNA:   3'- -AC-CAUGCgGUCGU-GCUCGG------UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 99943 0.66 0.796861
Target:  5'- cGGaAUGCCAcGCcCGcGCCACugcggGAGGCg -3'
miRNA:   3'- aCCaUGCGGU-CGuGCuCGGUG-----CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 109436 0.66 0.796861
Target:  5'- cGGccCGCCugcGGCugGAGgCGCGccucGGGCa -3'
miRNA:   3'- aCCauGCGG---UCGugCUCgGUGC----UCCG- -5'
5496 3' -58.3 NC_001798.1 + 135442 0.66 0.796861
Target:  5'- cGGUcuGCGgCGGCACcgGGGCUGCGuucuggGGGCu -3'
miRNA:   3'- aCCA--UGCgGUCGUG--CUCGGUGC------UCCG- -5'
5496 3' -58.3 NC_001798.1 + 56682 0.66 0.796861
Target:  5'- aUGGUugGCCgcGGCAgcaccgaugcCGuGCCGCu-GGCg -3'
miRNA:   3'- -ACCAugCGG--UCGU----------GCuCGGUGcuCCG- -5'
5496 3' -58.3 NC_001798.1 + 64911 0.66 0.794194
Target:  5'- ---aACGCaCAGCGCGuuacuggucuucauGGCCGCGAGcaGCa -3'
miRNA:   3'- accaUGCG-GUCGUGC--------------UCGGUGCUC--CG- -5'
5496 3' -58.3 NC_001798.1 + 135233 0.67 0.791515
Target:  5'- cGGgcUGCCGGaagcccgggggcggGCGGGCCugGAaaGGCu -3'
miRNA:   3'- aCCauGCGGUCg-------------UGCUCGGugCU--CCG- -5'
5496 3' -58.3 NC_001798.1 + 97577 0.67 0.787922
Target:  5'- cGGggaGCgCGGCccCGAGCCA-GGGGCg -3'
miRNA:   3'- aCCaugCG-GUCGu-GCUCGGUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 114760 0.67 0.787922
Target:  5'- cUGGgcaagGCgGCCAucGcCGCGAgGCCAuCGAGGCc -3'
miRNA:   3'- -ACCa----UG-CGGU--C-GUGCU-CGGU-GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 139335 0.67 0.787922
Target:  5'- ---gGCGCCcGCGCGcgcugugcGGCCAUGGcGGCg -3'
miRNA:   3'- accaUGCGGuCGUGC--------UCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 27939 0.67 0.787922
Target:  5'- gGGU-C-CCGGCGCcGGCCGCGccccGGCg -3'
miRNA:   3'- aCCAuGcGGUCGUGcUCGGUGCu---CCG- -5'
5496 3' -58.3 NC_001798.1 + 67487 0.67 0.787922
Target:  5'- cGGUAgGCC-GCG-GGGCCGgGGGGa -3'
miRNA:   3'- aCCAUgCGGuCGUgCUCGGUgCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.