miRNA display CGI


Results 21 - 40 of 263 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 86113 0.66 0.827786
Target:  5'- cGG-ACGCCcGCcgcgccgcggucaGCGAGuccugggaagcgcaCCGCGGGGCg -3'
miRNA:   3'- aCCaUGCGGuCG-------------UGCUC--------------GGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 4079 0.66 0.822778
Target:  5'- cGGU-CGCC-GCGgGGGuCCGggcCGGGGCg -3'
miRNA:   3'- aCCAuGCGGuCGUgCUC-GGU---GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 119379 0.66 0.822778
Target:  5'- cUGGU-CGCCuGGCugGcGCaCGCG-GGCc -3'
miRNA:   3'- -ACCAuGCGG-UCGugCuCG-GUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 39472 0.66 0.822778
Target:  5'- aGGggGgGCCuGGCGCGuGCCuCGuGGCc -3'
miRNA:   3'- aCCa-UgCGG-UCGUGCuCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 31772 0.66 0.822778
Target:  5'- aGGcGCGaCCGacgcGCGCGGGUCGgGAGGg -3'
miRNA:   3'- aCCaUGC-GGU----CGUGCUCGGUgCUCCg -5'
5496 3' -58.3 NC_001798.1 + 28807 0.66 0.822778
Target:  5'- gGGUccucCGCCGcCGCGGGCC-CG-GGCc -3'
miRNA:   3'- aCCAu---GCGGUcGUGCUCGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 25497 0.66 0.822778
Target:  5'- gGGcccgcUGCGCC-GCGCGgcGGCCugGAuGCg -3'
miRNA:   3'- aCC-----AUGCGGuCGUGC--UCGGugCUcCG- -5'
5496 3' -58.3 NC_001798.1 + 3898 0.66 0.822778
Target:  5'- cGGgGgGCCGGCccCGGGCCAC--GGCu -3'
miRNA:   3'- aCCaUgCGGUCGu-GCUCGGUGcuCCG- -5'
5496 3' -58.3 NC_001798.1 + 71178 0.66 0.822778
Target:  5'- cUGaGUGCGUCGGCGCuGGCCAucuucCGuccGGCc -3'
miRNA:   3'- -AC-CAUGCGGUCGUGcUCGGU-----GCu--CCG- -5'
5496 3' -58.3 NC_001798.1 + 58819 0.66 0.821937
Target:  5'- aUGG-ACgucgucgGCCAGCACcagcagcGCCGCGuAGGCg -3'
miRNA:   3'- -ACCaUG-------CGGUCGUGcu-----CGGUGC-UCCG- -5'
5496 3' -58.3 NC_001798.1 + 94538 0.66 0.821937
Target:  5'- -uGUuCGCgGGCGCGAgcGCCAacgcgucCGAGGCc -3'
miRNA:   3'- acCAuGCGgUCGUGCU--CGGU-------GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 1476 0.66 0.821937
Target:  5'- cGGcGCGCCgGGCGCcauggcgucgcccGcGCC-CGAGGCg -3'
miRNA:   3'- aCCaUGCGG-UCGUG-------------CuCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 27166 0.66 0.814296
Target:  5'- gGGcUGCuGCgAGCucgGGGCCGCGGGcGCg -3'
miRNA:   3'- aCC-AUG-CGgUCGug-CUCGGUGCUC-CG- -5'
5496 3' -58.3 NC_001798.1 + 17974 0.66 0.814296
Target:  5'- cGG-ACGUCGGgGgGGGCUGCGcGGCc -3'
miRNA:   3'- aCCaUGCGGUCgUgCUCGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 25589 0.66 0.814296
Target:  5'- aGG-AC-CUGGcCGCGGGCCGCGccggGGGCg -3'
miRNA:   3'- aCCaUGcGGUC-GUGCUCGGUGC----UCCG- -5'
5496 3' -58.3 NC_001798.1 + 5724 0.66 0.814296
Target:  5'- ---aGCGCUGGCGCccuGCC-CGGGGCc -3'
miRNA:   3'- accaUGCGGUCGUGcu-CGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 31994 0.66 0.814296
Target:  5'- aGGgcgGCGCCGcGC-CGGGCCcCGgacucggacucGGGCg -3'
miRNA:   3'- aCCa--UGCGGU-CGuGCUCGGuGC-----------UCCG- -5'
5496 3' -58.3 NC_001798.1 + 113622 0.66 0.814296
Target:  5'- cUGGgaauCGCCuGCGCGGccggcgccGCCAUGuggguGGCg -3'
miRNA:   3'- -ACCau--GCGGuCGUGCU--------CGGUGCu----CCG- -5'
5496 3' -58.3 NC_001798.1 + 150084 0.66 0.814296
Target:  5'- cUGGgggGCGa-GGgGCGAG-CGCGGGGCg -3'
miRNA:   3'- -ACCa--UGCggUCgUGCUCgGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 72566 0.66 0.813439
Target:  5'- ---gACGCCaAGCGCGcGCUggucgcgucccucGCGGGGCu -3'
miRNA:   3'- accaUGCGG-UCGUGCuCGG-------------UGCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.