miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 90403 0.75 0.347476
Target:  5'- cGGUugGgCCGGCGCGuucccgcGGCCGggcuUGAGGCg -3'
miRNA:   3'- aCCAugC-GGUCGUGC-------UCGGU----GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 135526 0.75 0.34824
Target:  5'- aGG-ACGCCcGC-CGGGCCcuCGAGGCg -3'
miRNA:   3'- aCCaUGCGGuCGuGCUCGGu-GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 36487 0.74 0.355941
Target:  5'- aGGggGCGCCGGCGCGAcgcgggcgGCCggGCGGGGg -3'
miRNA:   3'- aCCa-UGCGGUCGUGCU--------CGG--UGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 53862 0.74 0.371699
Target:  5'- cGGUucgugGCGCuCAGCGgGAGUCugGAGGg -3'
miRNA:   3'- aCCA-----UGCG-GUCGUgCUCGGugCUCCg -5'
5496 3' -58.3 NC_001798.1 + 125629 0.74 0.379755
Target:  5'- cGG-ACGCCAGCuGCuGGCCaaacaucgcggGCGAGGCg -3'
miRNA:   3'- aCCaUGCGGUCG-UGcUCGG-----------UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 22321 0.74 0.385463
Target:  5'- cGGgcCGCCGccacggacgcggacGCGCGGGCguCGGGGCg -3'
miRNA:   3'- aCCauGCGGU--------------CGUGCUCGguGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 34786 0.74 0.387926
Target:  5'- cGGaaacgcCGCCGGCGCG-GCC-CGGGGCc -3'
miRNA:   3'- aCCau----GCGGUCGUGCuCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 25900 0.74 0.395379
Target:  5'- gUGGUcucGCGgCAGCACGccuaccuGGCCuGCGAGGUg -3'
miRNA:   3'- -ACCA---UGCgGUCGUGC-------UCGG-UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 47584 0.74 0.396213
Target:  5'- cGGgaaGCGCC-GCGCGGGacCCACGAGGa -3'
miRNA:   3'- aCCa--UGCGGuCGUGCUC--GGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 39225 0.73 0.404612
Target:  5'- gGGUG-GCCAGCACggGAGCC-CaGGGGCu -3'
miRNA:   3'- aCCAUgCGGUCGUG--CUCGGuG-CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 63578 0.73 0.412267
Target:  5'- uUGGUGCGCaGGUACGcgauggcGGCgaACGAGGCg -3'
miRNA:   3'- -ACCAUGCGgUCGUGC-------UCGg-UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 146557 0.73 0.421743
Target:  5'- gUGGccgcGgGCCAGCagACGGGCCGCG-GGCc -3'
miRNA:   3'- -ACCa---UgCGGUCG--UGCUCGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 72371 0.73 0.421743
Target:  5'- cUGGUcCGCCAGCugGAGgaCGCGAucgugcugcugcGGCu -3'
miRNA:   3'- -ACCAuGCGGUCGugCUCg-GUGCU------------CCG- -5'
5496 3' -58.3 NC_001798.1 + 150845 0.73 0.430471
Target:  5'- aGGggGCGCCGGU-CGGGUCGCGgcGGGCu -3'
miRNA:   3'- aCCa-UGCGGUCGuGCUCGGUGC--UCCG- -5'
5496 3' -58.3 NC_001798.1 + 78852 0.73 0.430471
Target:  5'- cGGcACGCCGGCc---GCCugGGGGCg -3'
miRNA:   3'- aCCaUGCGGUCGugcuCGGugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 26483 0.73 0.439304
Target:  5'- cUGG-GCGUCGGcCGCGGGCCGCGcGGGg -3'
miRNA:   3'- -ACCaUGCGGUC-GUGCUCGGUGC-UCCg -5'
5496 3' -58.3 NC_001798.1 + 134272 0.73 0.439304
Target:  5'- cUGGaGCGCCAG-ACGGGCCGguGGGCc -3'
miRNA:   3'- -ACCaUGCGGUCgUGCUCGGUgcUCCG- -5'
5496 3' -58.3 NC_001798.1 + 9144 0.73 0.439304
Target:  5'- cGGcACGCgGGCGCGGcgccgcccgcGCCGgGGGGCa -3'
miRNA:   3'- aCCaUGCGgUCGUGCU----------CGGUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 44167 0.73 0.439304
Target:  5'- cGGUACGCCcccAGCACGcgcGCCuCGuGGUg -3'
miRNA:   3'- aCCAUGCGG---UCGUGCu--CGGuGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 152994 0.72 0.457275
Target:  5'- cGGgaaGCCGGCGCGGGgCGgucgcCGGGGCg -3'
miRNA:   3'- aCCaugCGGUCGUGCUCgGU-----GCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.