miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 95000 0.79 0.203884
Target:  5'- cUGGgcccCGCagggCGGCGCGGGCCugGAGGCc -3'
miRNA:   3'- -ACCau--GCG----GUCGUGCUCGGugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 24444 0.78 0.214039
Target:  5'- cGGUGCccGCCGGCuACGGcGCCGCGGGGg -3'
miRNA:   3'- aCCAUG--CGGUCG-UGCU-CGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 117574 0.78 0.214039
Target:  5'- cGGcGCGCCGGCAUGGaCCACG-GGCa -3'
miRNA:   3'- aCCaUGCGGUCGUGCUcGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 24158 0.78 0.224085
Target:  5'- gGGUACGCCauGGCgGCGGGCCGCuucggcuGGGGCc -3'
miRNA:   3'- aCCAUGCGG--UCG-UGCUCGGUG-------CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 111808 0.77 0.240761
Target:  5'- -cGUGCGCCGGuCGCGGGCguccaggggcuggCGCGGGGCg -3'
miRNA:   3'- acCAUGCGGUC-GUGCUCG-------------GUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 23787 0.77 0.241334
Target:  5'- gGGUACGUCAGCgGgGAGCCGuggccCGGGGCc -3'
miRNA:   3'- aCCAUGCGGUCG-UgCUCGGU-----GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 32803 0.77 0.253041
Target:  5'- cGGcgACGCCccCGCGGGCCACGGGGa -3'
miRNA:   3'- aCCa-UGCGGucGUGCUCGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 23879 0.77 0.253041
Target:  5'- cUGGgggGCGCCcgaggcggaggaGGCGCGGGCCcgguuCGAGGCc -3'
miRNA:   3'- -ACCa--UGCGG------------UCGUGCUCGGu----GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 99228 0.77 0.259067
Target:  5'- aGGU-CGCCAcgcGCACGAGCCG-GGGGUg -3'
miRNA:   3'- aCCAuGCGGU---CGUGCUCGGUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 153051 0.76 0.280435
Target:  5'- cGGUugGCCGGCgccGCccccuggggcgggcgGAGCgGCGGGGCg -3'
miRNA:   3'- aCCAugCGGUCG---UG---------------CUCGgUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 112412 0.76 0.280435
Target:  5'- gUGGUG-GCaUAGCugagcuccauggccgGCGAGCCACGGGGCg -3'
miRNA:   3'- -ACCAUgCG-GUCG---------------UGCUCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2494 0.76 0.284348
Target:  5'- gGGUcaGCGCCgcggGGCGCGgcGGCCGCGGcGGCg -3'
miRNA:   3'- aCCA--UGCGG----UCGUGC--UCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 99818 0.76 0.297702
Target:  5'- aGGUGgGCCAGC-CGcaguacuaccuGGCCACGGGGg -3'
miRNA:   3'- aCCAUgCGGUCGuGC-----------UCGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 103012 0.75 0.318637
Target:  5'- aGGUGCGCCcggccAGCGCGAGCU-CGGccucGGCg -3'
miRNA:   3'- aCCAUGCGG-----UCGUGCUCGGuGCU----CCG- -5'
5496 3' -58.3 NC_001798.1 + 129347 0.75 0.325857
Target:  5'- cGGaGCGCCcGC-CGGGCCugGCGGGGCc -3'
miRNA:   3'- aCCaUGCGGuCGuGCUCGG--UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 130784 0.75 0.325857
Target:  5'- aUGGUGCGUCGGCGcCGGGUCAaucAGGCc -3'
miRNA:   3'- -ACCAUGCGGUCGU-GCUCGGUgc-UCCG- -5'
5496 3' -58.3 NC_001798.1 + 2274 0.75 0.333197
Target:  5'- gGGgcgGCG-CAGCGCGcGGCCAgCGAGGCc -3'
miRNA:   3'- aCCa--UGCgGUCGUGC-UCGGU-GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 23680 0.75 0.333197
Target:  5'- cGGUG-GCCGGcCGCGAcGCCACG-GGCc -3'
miRNA:   3'- aCCAUgCGGUC-GUGCU-CGGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 66767 0.75 0.340658
Target:  5'- gGGUGCGgCGGCGUGGGCCGCGGaaucggagucGGCc -3'
miRNA:   3'- aCCAUGCgGUCGUGCUCGGUGCU----------CCG- -5'
5496 3' -58.3 NC_001798.1 + 24561 0.75 0.340658
Target:  5'- gUGGUggcgGCgGCCGGCgcgcggagGCGGGCCGCGuGGCc -3'
miRNA:   3'- -ACCA----UG-CGGUCG--------UGCUCGGUGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.