miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 71 0.68 0.702403
Target:  5'- cGGgcgGCGgCGGCggGCGGGCgGCaGGGCa -3'
miRNA:   3'- aCCa--UGCgGUCG--UGCUCGgUGcUCCG- -5'
5496 3' -58.3 NC_001798.1 + 153 0.69 0.63233
Target:  5'- cGG-GCGCC-GCcccuccccccGCGcGCCGCGGGGCu -3'
miRNA:   3'- aCCaUGCGGuCG----------UGCuCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 420 0.67 0.741365
Target:  5'- ---cGCGgCAGCcccucccccccGCGcGCCACGGGGCu -3'
miRNA:   3'- accaUGCgGUCG-----------UGCuCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 1362 0.68 0.699437
Target:  5'- cGGgcCGCCGcGCACGGcgucgcgccccagcGCCACGuagacGGGCc -3'
miRNA:   3'- aCCauGCGGU-CGUGCU--------------CGGUGC-----UCCG- -5'
5496 3' -58.3 NC_001798.1 + 1476 0.66 0.821937
Target:  5'- cGGcGCGCCgGGCGCcauggcgucgcccGcGCC-CGAGGCg -3'
miRNA:   3'- aCCaUGCGG-UCGUG-------------CuCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 1718 0.71 0.542503
Target:  5'- cGG-AgGCCAGCACGGuGCgGCGcAGGUc -3'
miRNA:   3'- aCCaUgCGGUCGUGCU-CGgUGC-UCCG- -5'
5496 3' -58.3 NC_001798.1 + 1801 0.7 0.572136
Target:  5'- aGGUAgGCguGCugccGCGAGaCCACG-GGCc -3'
miRNA:   3'- aCCAUgCGguCG----UGCUC-GGUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 2049 0.66 0.796861
Target:  5'- aGGgcCGCCAGCAgGcaggacagcccGCCGCGcucGGCg -3'
miRNA:   3'- aCCauGCGGUCGUgCu----------CGGUGCu--CCG- -5'
5496 3' -58.3 NC_001798.1 + 2203 0.71 0.542503
Target:  5'- aGGccgcCGCgCGGCgcaGCGGGCC-CGAGGCg -3'
miRNA:   3'- aCCau--GCG-GUCG---UGCUCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2274 0.75 0.333197
Target:  5'- gGGgcgGCG-CAGCGCGcGGCCAgCGAGGCc -3'
miRNA:   3'- aCCa--UGCgGUCGUGC-UCGGU-GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2357 0.68 0.731741
Target:  5'- gUGGUcCGUgAGCucggccACGGcCCGCGGGGCg -3'
miRNA:   3'- -ACCAuGCGgUCG------UGCUcGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2447 0.69 0.642404
Target:  5'- cUGGcgGCGCCAGCcgcccuGCGGGU--CGGGGCc -3'
miRNA:   3'- -ACCa-UGCGGUCG------UGCUCGguGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2494 0.76 0.284348
Target:  5'- gGGUcaGCGCCgcggGGCGCGgcGGCCGCGGcGGCg -3'
miRNA:   3'- aCCA--UGCGG----UCGUGC--UCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 2542 0.68 0.691504
Target:  5'- cGGgggGCG-CGGCccccgcgggagggGCG-GCCGCGGGGCg -3'
miRNA:   3'- aCCa--UGCgGUCG-------------UGCuCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2615 0.67 0.740406
Target:  5'- cGGgGCGCCgcccggcGGCGCccuGGCCgggGCGGGGCu -3'
miRNA:   3'- aCCaUGCGG-------UCGUGc--UCGG---UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2716 0.69 0.63233
Target:  5'- cGGUGuCgGCCAGCAgGGGgCGC-AGGCu -3'
miRNA:   3'- aCCAU-G-CGGUCGUgCUCgGUGcUCCG- -5'
5496 3' -58.3 NC_001798.1 + 2845 0.66 0.839229
Target:  5'- cGGcGCGCaCGGC---GGCCACGGcGGCc -3'
miRNA:   3'- aCCaUGCG-GUCGugcUCGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 2984 0.71 0.55233
Target:  5'- cGGgGCgGCCGGCccGCGGGCCcCGGGcGCg -3'
miRNA:   3'- aCCaUG-CGGUCG--UGCUCGGuGCUC-CG- -5'
5496 3' -58.3 NC_001798.1 + 3320 0.66 0.839229
Target:  5'- gGGgcgGCGgCGGCgGCGGGCUucccGCG-GGCg -3'
miRNA:   3'- aCCa--UGCgGUCG-UGCUCGG----UGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 3425 0.71 0.513395
Target:  5'- ---cGCGCCAGCAgGGGC-GCGuAGGCg -3'
miRNA:   3'- accaUGCGGUCGUgCUCGgUGC-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.