miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 154491 0.69 0.63233
Target:  5'- cGG-GCGCC-GCcccuccccccGCGcGCCGCGGGGCu -3'
miRNA:   3'- aCCaUGCGGuCG----------UGCuCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 154409 0.68 0.702403
Target:  5'- cGGgcgGCGgCGGCggGCGGGCgGCaGGGCa -3'
miRNA:   3'- aCCa--UGCgGUCG--UGCUCGgUGcUCCG- -5'
5496 3' -58.3 NC_001798.1 + 154066 0.72 0.49435
Target:  5'- cUGGaGCGCCggggcgcggcacGGCugGAGCgC-CGGGGCg -3'
miRNA:   3'- -ACCaUGCGG------------UCGugCUCG-GuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 153738 0.68 0.682542
Target:  5'- gUGGUGCG-CAGC-CGuagcGCCAggUGGGGCg -3'
miRNA:   3'- -ACCAUGCgGUCGuGCu---CGGU--GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 153051 0.76 0.280435
Target:  5'- cGGUugGCCGGCgccGCccccuggggcgggcgGAGCgGCGGGGCg -3'
miRNA:   3'- aCCAugCGGUCG---UG---------------CUCGgUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 152994 0.72 0.457275
Target:  5'- cGGgaaGCCGGCGCGGGgCGgucgcCGGGGCg -3'
miRNA:   3'- aCCaugCGGUCGUGCUCgGU-----GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 152049 0.66 0.831091
Target:  5'- cGGgggGCGgC-GCACGGcCCACGGGGg -3'
miRNA:   3'- aCCa--UGCgGuCGUGCUcGGUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 150845 0.73 0.430471
Target:  5'- aGGggGCGCCGGU-CGGGUCGCGgcGGGCu -3'
miRNA:   3'- aCCa-UGCGGUCGuGCUCGGUGC--UCCG- -5'
5496 3' -58.3 NC_001798.1 + 150730 0.68 0.702403
Target:  5'- gGGgaagagAgGCCacucucGGCACGAcgGCCGCGAcGGCa -3'
miRNA:   3'- aCCa-----UgCGG------UCGUGCU--CGGUGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 150421 0.7 0.601133
Target:  5'- gGGgcgGCGgCGGCGCGGGgCggacuccggacgcGCGGGGCg -3'
miRNA:   3'- aCCa--UGCgGUCGUGCUCgG-------------UGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 150355 0.71 0.55233
Target:  5'- cGGUGCGCguccacCGGCACGgcgGGCgGCGcGGGCc -3'
miRNA:   3'- aCCAUGCG------GUCGUGC---UCGgUGC-UCCG- -5'
5496 3' -58.3 NC_001798.1 + 150084 0.66 0.814296
Target:  5'- cUGGgggGCGa-GGgGCGAG-CGCGGGGCg -3'
miRNA:   3'- -ACCa--UGCggUCgUGCUCgGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 150025 0.68 0.722033
Target:  5'- cGGU-CGCCcgAGUcCGAGUC-CGGGGCc -3'
miRNA:   3'- aCCAuGCGG--UCGuGCUCGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 149996 0.71 0.542503
Target:  5'- cGG-ACGCCGGgGCGAGCgGCccguGGCc -3'
miRNA:   3'- aCCaUGCGGUCgUGCUCGgUGcu--CCG- -5'
5496 3' -58.3 NC_001798.1 + 149661 0.72 0.503834
Target:  5'- cGG-GCGCCGGguCGCGGGCCccgggcuCGGGGCc -3'
miRNA:   3'- aCCaUGCGGUC--GUGCUCGGu------GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 149457 0.66 0.839229
Target:  5'- gGGUGCGgCGGCuccacGCGggGGCCGCGGcccGCa -3'
miRNA:   3'- aCCAUGCgGUCG-----UGC--UCGGUGCUc--CG- -5'
5496 3' -58.3 NC_001798.1 + 149269 0.67 0.778848
Target:  5'- gGGcGCGCCcuGCuccCGAGaCCACGGguGGCg -3'
miRNA:   3'- aCCaUGCGGu-CGu--GCUC-GGUGCU--CCG- -5'
5496 3' -58.3 NC_001798.1 + 148416 0.68 0.712251
Target:  5'- gGGUggGCGCCGGgGCGGGggugggCACG-GGCg -3'
miRNA:   3'- aCCA--UGCGGUCgUGCUCg-----GUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 148037 0.68 0.731741
Target:  5'- ---cGCGUgGGCGCGGGCgGgGGGGUg -3'
miRNA:   3'- accaUGCGgUCGUGCUCGgUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 146557 0.73 0.421743
Target:  5'- gUGGccgcGgGCCAGCagACGGGCCGCG-GGCc -3'
miRNA:   3'- -ACCa---UgCGGUCG--UGCUCGGUGCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.