miRNA display CGI


Results 21 - 40 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 3' -58.3 NC_001798.1 + 3669 0.66 0.831091
Target:  5'- cGG-GCGCCAcGCGCGGGuUCugGAGcCa -3'
miRNA:   3'- aCCaUGCGGU-CGUGCUC-GGugCUCcG- -5'
5496 3' -58.3 NC_001798.1 + 3771 0.68 0.731741
Target:  5'- cGG-GCGCCcaCACGGGCgC-CGGGGCg -3'
miRNA:   3'- aCCaUGCGGucGUGCUCG-GuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 3898 0.66 0.822778
Target:  5'- cGGgGgGCCGGCccCGGGCCAC--GGCu -3'
miRNA:   3'- aCCaUgCGGUCGu-GCUCGGUGcuCCG- -5'
5496 3' -58.3 NC_001798.1 + 4037 0.69 0.65247
Target:  5'- cGGccacCGCC-GCGCGGGCC-CGGcGGCg -3'
miRNA:   3'- aCCau--GCGGuCGUGCUCGGuGCU-CCG- -5'
5496 3' -58.3 NC_001798.1 + 4079 0.66 0.822778
Target:  5'- cGGU-CGCC-GCGgGGGuCCGggcCGGGGCg -3'
miRNA:   3'- aCCAuGCGGuCGUgCUC-GGU---GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 4206 0.67 0.778848
Target:  5'- gUGGUcugcgGCGCUGGCGgGGGC-GCG-GGCg -3'
miRNA:   3'- -ACCA-----UGCGGUCGUgCUCGgUGCuCCG- -5'
5496 3' -58.3 NC_001798.1 + 4352 0.69 0.642404
Target:  5'- cGGccgaGCGCCGGCGgGGGgCGCGccGGCg -3'
miRNA:   3'- aCCa---UGCGGUCGUgCUCgGUGCu-CCG- -5'
5496 3' -58.3 NC_001798.1 + 4411 0.69 0.672548
Target:  5'- cGGgGCGCCGGggguCGCGgcgacaggcuGGCCAUGGGGUc -3'
miRNA:   3'- aCCaUGCGGUC----GUGC----------UCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 4881 0.67 0.778848
Target:  5'- cGGUcCGUCGGCugGAuCCGgagaucCGGGGCc -3'
miRNA:   3'- aCCAuGCGGUCGugCUcGGU------GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 5567 0.67 0.778848
Target:  5'- uUGGccccCGCCGGCcccaaAgGGGCCGgCGAGGUc -3'
miRNA:   3'- -ACCau--GCGGUCG-----UgCUCGGU-GCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 5724 0.66 0.814296
Target:  5'- ---aGCGCUGGCGCccuGCC-CGGGGCc -3'
miRNA:   3'- accaUGCGGUCGUGcu-CGGuGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 6057 0.66 0.839229
Target:  5'- ---gACGCCGGCgGCGAGC---GGGGCa -3'
miRNA:   3'- accaUGCGGUCG-UGCUCGgugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 6352 0.67 0.769647
Target:  5'- gGGgacGgGCCGGggggACGGGCCGgGGGGCc -3'
miRNA:   3'- aCCa--UgCGGUCg---UGCUCGGUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 8782 0.69 0.672548
Target:  5'- aGGcuucUGCCGGgACGggcgaGGCCGCGGGGUa -3'
miRNA:   3'- aCCau--GCGGUCgUGC-----UCGGUGCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 9144 0.73 0.439304
Target:  5'- cGGcACGCgGGCGCGGcgccgcccgcGCCGgGGGGCa -3'
miRNA:   3'- aCCaUGCGgUCGUGCU----------CGGUgCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 9613 0.71 0.536635
Target:  5'- aGGgcgGCCAGCAacaGGGCCGCccccagcaccgccccGAGGCg -3'
miRNA:   3'- aCCaugCGGUCGUg--CUCGGUG---------------CUCCG- -5'
5496 3' -58.3 NC_001798.1 + 10281 0.7 0.612189
Target:  5'- gGGUGCGUCGGgG-GGGCgACGGGGg -3'
miRNA:   3'- aCCAUGCGGUCgUgCUCGgUGCUCCg -5'
5496 3' -58.3 NC_001798.1 + 11998 0.68 0.712251
Target:  5'- gUGGUGCGUCgAGCGacacaaggUGAacGCCACGgcgGGGCg -3'
miRNA:   3'- -ACCAUGCGG-UCGU--------GCU--CGGUGC---UCCG- -5'
5496 3' -58.3 NC_001798.1 + 12669 0.67 0.741365
Target:  5'- gGGUACugccgGCCAGCGCGccgaugaucaGGCccggguugCugGGGGCg -3'
miRNA:   3'- aCCAUG-----CGGUCGUGC----------UCG--------GugCUCCG- -5'
5496 3' -58.3 NC_001798.1 + 12954 0.68 0.712251
Target:  5'- cGGUGCGCUGGUuuuCGGGgaaaaGCGGGGUa -3'
miRNA:   3'- aCCAUGCGGUCGu--GCUCgg---UGCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.