miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 51259 0.67 0.743104
Target:  5'- cGGACGCCgGGACagcgccaucacgcggGCCCCGCGGggaggcuaCCUg -3'
miRNA:   3'- -UCUGCGGaCUUGg--------------UGGGGCGCUa-------GGA- -5'
5496 5' -58.7 NC_001798.1 + 150680 0.67 0.742151
Target:  5'- cGGCGUCUucGCC-CaCCCGCGcgCCUg -3'
miRNA:   3'- uCUGCGGAcuUGGuG-GGGCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 114681 0.67 0.742151
Target:  5'- cGGGCGCCUGGcgACCaggguuGCCCgGgCGAcCCUg -3'
miRNA:   3'- -UCUGCGGACU--UGG------UGGGgC-GCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 72228 0.67 0.742151
Target:  5'- gGGGgGCCgucGAGCagcugCGgCCCGCGGUCCa -3'
miRNA:   3'- -UCUgCGGa--CUUG-----GUgGGGCGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 35438 0.67 0.742151
Target:  5'- gGGAgGCgUGGGCCGCUggcgCCGCGGcCCg -3'
miRNA:   3'- -UCUgCGgACUUGGUGG----GGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 34863 0.67 0.742151
Target:  5'- gGGACGCCUu--CCGCCCgGCG--CCg -3'
miRNA:   3'- -UCUGCGGAcuuGGUGGGgCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 24214 0.67 0.741197
Target:  5'- cGugGCCaUGAGCCGCCgcuacgaCCGCGcgCa- -3'
miRNA:   3'- uCugCGG-ACUUGGUGG-------GGCGCuaGga -5'
5496 5' -58.7 NC_001798.1 + 91328 0.67 0.732574
Target:  5'- cAGACGCCgcccGAGCCGccggcuuccCCCCGgGGgaagCCg -3'
miRNA:   3'- -UCUGCGGa---CUUGGU---------GGGGCgCUa---GGa -5'
5496 5' -58.7 NC_001798.1 + 31608 0.67 0.722914
Target:  5'- -cGCGUCcgGAGuCCGCCCCGCGccgCCg -3'
miRNA:   3'- ucUGCGGa-CUU-GGUGGGGCGCua-GGa -5'
5496 5' -58.7 NC_001798.1 + 115478 0.67 0.722914
Target:  5'- cGGGgGCgUGAACCacgACCCCGuCGAggCCg -3'
miRNA:   3'- -UCUgCGgACUUGG---UGGGGC-GCUa-GGa -5'
5496 5' -58.7 NC_001798.1 + 25434 0.67 0.722914
Target:  5'- -cGCGCgCUGcGCCGCCCCGCcccCCg -3'
miRNA:   3'- ucUGCG-GACuUGGUGGGGCGcuaGGa -5'
5496 5' -58.7 NC_001798.1 + 83397 0.67 0.722914
Target:  5'- ---gGCgUGggUCACCCCGaGGUCCg -3'
miRNA:   3'- ucugCGgACuuGGUGGGGCgCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 71852 0.67 0.722914
Target:  5'- cGGGCGCCU-AGCCAcgcCCCCuCGGUUCa -3'
miRNA:   3'- -UCUGCGGAcUUGGU---GGGGcGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 138899 0.67 0.721944
Target:  5'- cGGucCGCUUGGGCCGCCCgGCGcaaagcaGUCUa -3'
miRNA:   3'- -UCu-GCGGACUUGGUGGGgCGC-------UAGGa -5'
5496 5' -58.7 NC_001798.1 + 137239 0.68 0.717082
Target:  5'- -aGCGCCUGGuugcugauccccuccGCCACCUCgaccagacuGCGGUCCc -3'
miRNA:   3'- ucUGCGGACU---------------UGGUGGGG---------CGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 154426 0.68 0.713179
Target:  5'- cGGGCGgCaGGGCaGCCCCGCGcgCCc -3'
miRNA:   3'- -UCUGCgGaCUUGgUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 31464 0.68 0.713179
Target:  5'- --cCGCCgucuccgcGCCGCCCCGCGggCCc -3'
miRNA:   3'- ucuGCGGacu-----UGGUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 27109 0.68 0.713179
Target:  5'- aGGugGCCcGAGCCcCCCCGCaGGagCg -3'
miRNA:   3'- -UCugCGGaCUUGGuGGGGCG-CUagGa -5'
5496 5' -58.7 NC_001798.1 + 88 0.68 0.713179
Target:  5'- cGGGCGgCaGGGCaGCCCCGCGcgCCc -3'
miRNA:   3'- -UCUGCgGaCUUGgUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 49871 0.68 0.703378
Target:  5'- gGGGCGCCccucACgACCCCGCccGUCCUg -3'
miRNA:   3'- -UCUGCGGacu-UGgUGGGGCGc-UAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.