miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 141312 0.66 0.797366
Target:  5'- cGAagaGCCUGAGaCCACCgCgGCcGUCCa -3'
miRNA:   3'- uCUg--CGGACUU-GGUGG-GgCGcUAGGa -5'
5496 5' -58.7 NC_001798.1 + 105067 0.66 0.779446
Target:  5'- aAGACGacucCCgacGAACCcgcgGCCCCGCGGcCCg -3'
miRNA:   3'- -UCUGC----GGa--CUUGG----UGGGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 78413 0.66 0.779446
Target:  5'- uGGAgCGCgUGGACCagaGCCCCGUGAa--- -3'
miRNA:   3'- -UCU-GCGgACUUGG---UGGGGCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 53900 0.67 0.770291
Target:  5'- gAGACGUUUGcgcGCCACCuggaCCGCGggCCc -3'
miRNA:   3'- -UCUGCGGACu--UGGUGG----GGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 124087 0.67 0.770291
Target:  5'- cGGCGCCUG---CGCCCCGaCGGcCCa -3'
miRNA:   3'- uCUGCGGACuugGUGGGGC-GCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 31375 0.67 0.770291
Target:  5'- aAGACGCCgcggcggcgGAgggcaggacGCC-CCCCGCGAgacagCCc -3'
miRNA:   3'- -UCUGCGGa--------CU---------UGGuGGGGCGCUa----GGa -5'
5496 5' -58.7 NC_001798.1 + 31898 0.67 0.770291
Target:  5'- gAGGCGCgggucGGACUcggGCCCCGCGG-CCUc -3'
miRNA:   3'- -UCUGCGga---CUUGG---UGGGGCGCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 58542 0.67 0.770291
Target:  5'- cGugGUCUGuugGCCGCUCgGCG-UCCUc -3'
miRNA:   3'- uCugCGGACu--UGGUGGGgCGCuAGGA- -5'
5496 5' -58.7 NC_001798.1 + 96457 0.67 0.761018
Target:  5'- cGGCuCCUGGGCCACCUggaaacguuCGCGA-CCa -3'
miRNA:   3'- uCUGcGGACUUGGUGGG---------GCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 75621 0.67 0.761018
Target:  5'- cGGGCGCCUGGcCCucGCUaaGCuGGUCCUg -3'
miRNA:   3'- -UCUGCGGACUuGG--UGGggCG-CUAGGA- -5'
5496 5' -58.7 NC_001798.1 + 78976 0.67 0.761018
Target:  5'- gGGGCGCCUGGAaguCCCC-CGAgggguUCCg -3'
miRNA:   3'- -UCUGCGGACUUgguGGGGcGCU-----AGGa -5'
5496 5' -58.7 NC_001798.1 + 87194 0.67 0.761018
Target:  5'- cGGGCGgCUG-GCCACCgucagCCGCGAggcccucaUCCUg -3'
miRNA:   3'- -UCUGCgGACuUGGUGG-----GGCGCU--------AGGA- -5'
5496 5' -58.7 NC_001798.1 + 134956 0.67 0.761018
Target:  5'- gGGGCGCCgcGGCCACCcaugCCGCGugCCUg -3'
miRNA:   3'- -UCUGCGGacUUGGUGG----GGCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 142204 0.67 0.761018
Target:  5'- -cGCGCCaGGACCgccuGCCCCGCGGa--- -3'
miRNA:   3'- ucUGCGGaCUUGG----UGGGGCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 79393 0.67 0.761018
Target:  5'- cGGGCGCg-GAGuCCGCgCCCGCGccCCUg -3'
miRNA:   3'- -UCUGCGgaCUU-GGUG-GGGCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 28592 0.67 0.7554
Target:  5'- uGGugGCCUGGgagACgGCCgCGCGccuggcccgacggggGUCCUg -3'
miRNA:   3'- -UCugCGGACU---UGgUGGgGCGC---------------UAGGA- -5'
5496 5' -58.7 NC_001798.1 + 150810 0.67 0.751635
Target:  5'- gGGGCGCCgccgcugcuGCUGCUCCGCGGggcgCCa -3'
miRNA:   3'- -UCUGCGGacu------UGGUGGGGCGCUa---GGa -5'
5496 5' -58.7 NC_001798.1 + 122424 0.67 0.751635
Target:  5'- cGGAgGCCUGuGCCGCCgaGCGcgUCg -3'
miRNA:   3'- -UCUgCGGACuUGGUGGggCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 109532 0.67 0.751635
Target:  5'- uGGCGUucgugUUGGACaGCCCCGCGG-CCUa -3'
miRNA:   3'- uCUGCG-----GACUUGgUGGGGCGCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 135004 0.67 0.751635
Target:  5'- uGGGCGCCaGggUCGuccugcCCCCGCGGgcauggCCg -3'
miRNA:   3'- -UCUGCGGaCuuGGU------GGGGCGCUa-----GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.