miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 28339 0.68 0.66068
Target:  5'- -cGCGCCUGAGCCuGcgccggcggcggccCCCCGCG-UCCc -3'
miRNA:   3'- ucUGCGGACUUGG-U--------------GGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 28592 0.67 0.7554
Target:  5'- uGGugGCCUGGgagACgGCCgCGCGccuggcccgacggggGUCCUg -3'
miRNA:   3'- -UCugCGGACU---UGgUGGgGCGC---------------UAGGA- -5'
5496 5' -58.7 NC_001798.1 + 29030 0.66 0.806115
Target:  5'- cGGAcucCGCCccgGcGACCGCCCCGCGccggcuUCCc -3'
miRNA:   3'- -UCU---GCGGa--C-UUGGUGGGGCGCu-----AGGa -5'
5496 5' -58.7 NC_001798.1 + 29939 0.68 0.673662
Target:  5'- gGGACGCUUGAcgggGCCgACCCCcggcccgcuuaaGCGGUCg- -3'
miRNA:   3'- -UCUGCGGACU----UGG-UGGGG------------CGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 30810 0.66 0.823151
Target:  5'- uGGACGggcaacCCgcGGACgGCCCCGCGcUCCc -3'
miRNA:   3'- -UCUGC------GGa-CUUGgUGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 31375 0.67 0.770291
Target:  5'- aAGACGCCgcggcggcgGAgggcaggacGCC-CCCCGCGAgacagCCc -3'
miRNA:   3'- -UCUGCGGa--------CU---------UGGuGGGGCGCUa----GGa -5'
5496 5' -58.7 NC_001798.1 + 31464 0.68 0.713179
Target:  5'- --cCGCCgucuccgcGCCGCCCCGCGggCCc -3'
miRNA:   3'- ucuGCGGacu-----UGGUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 31608 0.67 0.722914
Target:  5'- -cGCGUCcgGAGuCCGCCCCGCGccgCCg -3'
miRNA:   3'- ucUGCGGa-CUU-GGUGGGGCGCua-GGa -5'
5496 5' -58.7 NC_001798.1 + 31898 0.67 0.770291
Target:  5'- gAGGCGCgggucGGACUcggGCCCCGCGG-CCUc -3'
miRNA:   3'- -UCUGCGga---CUUGG---UGGGGCGCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 34863 0.67 0.742151
Target:  5'- gGGACGCCUu--CCGCCCgGCG--CCg -3'
miRNA:   3'- -UCUGCGGAcuuGGUGGGgCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 35438 0.67 0.742151
Target:  5'- gGGAgGCgUGGGCCGCUggcgCCGCGGcCCg -3'
miRNA:   3'- -UCUgCGgACUUGGUGG----GGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 36234 0.66 0.806115
Target:  5'- -cGCGCCcGcguuucuGCCGCCCgCGCGcUCCUg -3'
miRNA:   3'- ucUGCGGaCu------UGGUGGG-GCGCuAGGA- -5'
5496 5' -58.7 NC_001798.1 + 37167 0.69 0.643651
Target:  5'- cGcCGCCUGGcggGCCGCUCgGCGcgCCa -3'
miRNA:   3'- uCuGCGGACU---UGGUGGGgCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 43055 0.69 0.643651
Target:  5'- cGGCGCgUGAGCCGCCggCCgaGCGcgCCg -3'
miRNA:   3'- uCUGCGgACUUGGUGG--GG--CGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 43089 0.69 0.623587
Target:  5'- cGGGCGCCgccGCCGCgUCCGCGA-CCa -3'
miRNA:   3'- -UCUGCGGacuUGGUG-GGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 47380 0.66 0.814713
Target:  5'- --cCGCaggGAGCCACuCCCGCGGcCCc -3'
miRNA:   3'- ucuGCGga-CUUGGUG-GGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 48106 0.71 0.505571
Target:  5'- cGGCGCCgUGGACC-CCCCGgGuggCCg -3'
miRNA:   3'- uCUGCGG-ACUUGGuGGGGCgCua-GGa -5'
5496 5' -58.7 NC_001798.1 + 48361 0.77 0.26097
Target:  5'- cGGcCGCCcgGGGCCGCCCCGCGGggcgugCCg -3'
miRNA:   3'- -UCuGCGGa-CUUGGUGGGGCGCUa-----GGa -5'
5496 5' -58.7 NC_001798.1 + 49871 0.68 0.703378
Target:  5'- gGGGCGCCccucACgACCCCGCccGUCCUg -3'
miRNA:   3'- -UCUGCGGacu-UGgUGGGGCGc-UAGGA- -5'
5496 5' -58.7 NC_001798.1 + 51259 0.67 0.743104
Target:  5'- cGGACGCCgGGACagcgccaucacgcggGCCCCGCGGggaggcuaCCUg -3'
miRNA:   3'- -UCUGCGGaCUUGg--------------UGGGGCGCUa-------GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.