miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 88 0.68 0.713179
Target:  5'- cGGGCGgCaGGGCaGCCCCGCGcgCCc -3'
miRNA:   3'- -UCUGCgGaCUUGgUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 153 0.71 0.524714
Target:  5'- cGGGCGCCgccccuCC-CCCCGCGcgCCg -3'
miRNA:   3'- -UCUGCGGacuu--GGuGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 2451 0.72 0.486734
Target:  5'- cGGCGCC--AGCCGCCCUGCGggUCg -3'
miRNA:   3'- uCUGCGGacUUGGUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 2609 0.66 0.814713
Target:  5'- gGGGCGCggGGcGCCGCCCgGCGGcgcCCUg -3'
miRNA:   3'- -UCUGCGgaCU-UGGUGGGgCGCUa--GGA- -5'
5496 5' -58.7 NC_001798.1 + 3669 0.69 0.647662
Target:  5'- cGGGCGCCacgcgcggguucugGAGCCACCCCaucgccuccGCG-UCCg -3'
miRNA:   3'- -UCUGCGGa-------------CUUGGUGGGG---------CGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 3799 0.66 0.797366
Target:  5'- cGAgGCCUcGAACCgGgCCCGCGccUCCUc -3'
miRNA:   3'- uCUgCGGA-CUUGG-UgGGGCGCu-AGGA- -5'
5496 5' -58.7 NC_001798.1 + 4745 0.71 0.515106
Target:  5'- cGGACGCCgGGGCCGCCUCGuCGGcaUCg- -3'
miRNA:   3'- -UCUGCGGaCUUGGUGGGGC-GCU--AGga -5'
5496 5' -58.7 NC_001798.1 + 5729 0.66 0.814713
Target:  5'- uGGCGCCcugcccgGGGCCcgcgucAUCCCGCGcUCCg -3'
miRNA:   3'- uCUGCGGa------CUUGG------UGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 12904 0.68 0.673662
Target:  5'- cGGGgGCUUGGggccguGCCACCCgGCGAUUUUu -3'
miRNA:   3'- -UCUgCGGACU------UGGUGGGgCGCUAGGA- -5'
5496 5' -58.7 NC_001798.1 + 24214 0.67 0.741197
Target:  5'- cGugGCCaUGAGCCGCCgcuacgaCCGCGcgCa- -3'
miRNA:   3'- uCugCGG-ACUUGGUGG-------GGCGCuaGga -5'
5496 5' -58.7 NC_001798.1 + 24487 0.77 0.237506
Target:  5'- gGGGCGCCUGAgcGCCGCgCCCGCc-UCCg -3'
miRNA:   3'- -UCUGCGGACU--UGGUG-GGGCGcuAGGa -5'
5496 5' -58.7 NC_001798.1 + 24603 0.72 0.459123
Target:  5'- uGGAgUGCCUGGccGCCugCCgCGgGAUCCUg -3'
miRNA:   3'- -UCU-GCGGACU--UGGugGG-GCgCUAGGA- -5'
5496 5' -58.7 NC_001798.1 + 25087 0.7 0.603548
Target:  5'- aGGGCGCCgccGGGCggCGCCCCGCGccCCc -3'
miRNA:   3'- -UCUGCGGa--CUUG--GUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 25133 0.75 0.327827
Target:  5'- cGGACGCCcc--CCGCCCCGCGG-CCg -3'
miRNA:   3'- -UCUGCGGacuuGGUGGGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 25322 0.69 0.653674
Target:  5'- uGGAgGCCU--ACUgcGCCCCGCGggCCg -3'
miRNA:   3'- -UCUgCGGAcuUGG--UGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 25434 0.67 0.722914
Target:  5'- -cGCGCgCUGcGCCGCCCCGCcccCCg -3'
miRNA:   3'- ucUGCG-GACuUGGUGGGGCGcuaGGa -5'
5496 5' -58.7 NC_001798.1 + 26225 0.66 0.797366
Target:  5'- cGACGCCaUGG--CGCCCgGCGcgCCg -3'
miRNA:   3'- uCUGCGG-ACUugGUGGGgCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 26295 0.68 0.693519
Target:  5'- uGGgGCCUGGGCgCGCCgCUGCGGcCCg -3'
miRNA:   3'- uCUgCGGACUUG-GUGG-GGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 27109 0.68 0.713179
Target:  5'- aGGugGCCcGAGCCcCCCCGCaGGagCg -3'
miRNA:   3'- -UCugCGGaCUUGGuGGGGCG-CUagGa -5'
5496 5' -58.7 NC_001798.1 + 27945 0.66 0.806115
Target:  5'- cGGCGCCg--GCCgcGCCCCgGCGcUCCa -3'
miRNA:   3'- uCUGCGGacuUGG--UGGGG-CGCuAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.