miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 154491 0.71 0.524714
Target:  5'- cGGGCGCCgccccuCC-CCCCGCGcgCCg -3'
miRNA:   3'- -UCUGCGGacuu--GGuGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 154426 0.68 0.713179
Target:  5'- cGGGCGgCaGGGCaGCCCCGCGcgCCc -3'
miRNA:   3'- -UCUGCgGaCUUGgUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 150810 0.67 0.751635
Target:  5'- gGGGCGCCgccgcugcuGCUGCUCCGCGGggcgCCa -3'
miRNA:   3'- -UCUGCGGacu------UGGUGGGGCGCUa---GGa -5'
5496 5' -58.7 NC_001798.1 + 150680 0.67 0.742151
Target:  5'- cGGCGUCUucGCC-CaCCCGCGcgCCUg -3'
miRNA:   3'- uCUGCGGAcuUGGuG-GGGCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 149996 0.69 0.63362
Target:  5'- cGGACGCCggggcGAGCgGCCcguggCCGCGGUCg- -3'
miRNA:   3'- -UCUGCGGa----CUUGgUGG-----GGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 149604 0.72 0.46732
Target:  5'- aAGGCGCCaGGGCCAcgacgcucgagacCCCCGCGAUg-- -3'
miRNA:   3'- -UCUGCGGaCUUGGU-------------GGGGCGCUAgga -5'
5496 5' -58.7 NC_001798.1 + 147178 0.74 0.34263
Target:  5'- cGGCGCCgggcgGAAggcgucccCCGCCCgGCGGUCCg -3'
miRNA:   3'- uCUGCGGa----CUU--------GGUGGGgCGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 145772 0.69 0.613561
Target:  5'- --cCGCCgc--CCACCCCGgGGUCCa -3'
miRNA:   3'- ucuGCGGacuuGGUGGGGCgCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 143882 0.71 0.505571
Target:  5'- gGGACGCC---GCCGCCCCGCGcUUg- -3'
miRNA:   3'- -UCUGCGGacuUGGUGGGGCGCuAGga -5'
5496 5' -58.7 NC_001798.1 + 143821 0.71 0.505571
Target:  5'- cGGCGCgcggccagccgUUGGACCACCCCGCccacaaaacGGUCCc -3'
miRNA:   3'- uCUGCG-----------GACUUGGUGGGGCG---------CUAGGa -5'
5496 5' -58.7 NC_001798.1 + 142204 0.67 0.761018
Target:  5'- -cGCGCCaGGACCgccuGCCCCGCGGa--- -3'
miRNA:   3'- ucUGCGGaCUUGG----UGGGGCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 141312 0.66 0.797366
Target:  5'- cGAagaGCCUGAGaCCACCgCgGCcGUCCa -3'
miRNA:   3'- uCUg--CGGACUU-GGUGG-GgCGcUAGGa -5'
5496 5' -58.7 NC_001798.1 + 139302 0.73 0.398155
Target:  5'- -aGCGCCgcgucGCCGCCCCGCG-UCCg -3'
miRNA:   3'- ucUGCGGacu--UGGUGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 138899 0.67 0.721944
Target:  5'- cGGucCGCUUGGGCCGCCCgGCGcaaagcaGUCUa -3'
miRNA:   3'- -UCu-GCGGACUUGGUGGGgCGC-------UAGGa -5'
5496 5' -58.7 NC_001798.1 + 138407 0.75 0.327827
Target:  5'- cGGCGCC--AGCCACCCCGCGcUCgCUg -3'
miRNA:   3'- uCUGCGGacUUGGUGGGGCGCuAG-GA- -5'
5496 5' -58.7 NC_001798.1 + 137239 0.68 0.717082
Target:  5'- -aGCGCCUGGuugcugauccccuccGCCACCUCgaccagacuGCGGUCCc -3'
miRNA:   3'- ucUGCGGACU---------------UGGUGGGG---------CGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 135828 0.69 0.63362
Target:  5'- aGGACGCCUGuGACCGCUuuGUccugGAUgCCUu -3'
miRNA:   3'- -UCUGCGGAC-UUGGUGGggCG----CUA-GGA- -5'
5496 5' -58.7 NC_001798.1 + 135340 0.73 0.423653
Target:  5'- cGGACGCgUGcgacGCCuGCCCCGCGcUCCg -3'
miRNA:   3'- -UCUGCGgACu---UGG-UGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 135192 0.66 0.806115
Target:  5'- cAGGCccagcuCCUG-GCCGCCCuCGCGggCCUc -3'
miRNA:   3'- -UCUGc-----GGACuUGGUGGG-GCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 135004 0.67 0.751635
Target:  5'- uGGGCGCCaGggUCGuccugcCCCCGCGGgcauggCCg -3'
miRNA:   3'- -UCUGCGGaCuuGGU------GGGGCGCUa-----GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.