miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 24487 0.77 0.237506
Target:  5'- gGGGCGCCUGAgcGCCGCgCCCGCc-UCCg -3'
miRNA:   3'- -UCUGCGGACU--UGGUG-GGGCGcuAGGa -5'
5496 5' -58.7 NC_001798.1 + 48361 0.77 0.26097
Target:  5'- cGGcCGCCcgGGGCCGCCCCGCGGggcgugCCg -3'
miRNA:   3'- -UCuGCGGa-CUUGGUGGGGCGCUa-----GGa -5'
5496 5' -58.7 NC_001798.1 + 62230 0.76 0.295595
Target:  5'- aGGACGUgcugcgcgagugucaCUGGACCGCCCCGagcCGAUCCc -3'
miRNA:   3'- -UCUGCG---------------GACUUGGUGGGGC---GCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 138407 0.75 0.327827
Target:  5'- cGGCGCC--AGCCACCCCGCGcUCgCUg -3'
miRNA:   3'- uCUGCGGacUUGGUGGGGCGCuAG-GA- -5'
5496 5' -58.7 NC_001798.1 + 25133 0.75 0.327827
Target:  5'- cGGACGCCcc--CCGCCCCGCGG-CCg -3'
miRNA:   3'- -UCUGCGGacuuGGUGGGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 147178 0.74 0.34263
Target:  5'- cGGCGCCgggcgGAAggcgucccCCGCCCgGCGGUCCg -3'
miRNA:   3'- uCUGCGGa----CUU--------GGUGGGgCGCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 124405 0.74 0.365727
Target:  5'- cAGcCGCCUguuugcaacGAGCUGCCCCGCGGUCg- -3'
miRNA:   3'- -UCuGCGGA---------CUUGGUGGGGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 82092 0.74 0.365727
Target:  5'- cGGCGCCUc-ACgCGCCCCGCGGUCg- -3'
miRNA:   3'- uCUGCGGAcuUG-GUGGGGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 139302 0.73 0.398155
Target:  5'- -aGCGCCgcgucGCCGCCCCGCG-UCCg -3'
miRNA:   3'- ucUGCGGacu--UGGUGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 135340 0.73 0.423653
Target:  5'- cGGACGCgUGcgacGCCuGCCCCGCGcUCCg -3'
miRNA:   3'- -UCUGCGgACu---UGG-UGGGGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 126304 0.73 0.423653
Target:  5'- cGGCGCCgucuccgGAGcCCGCCCCG-GGUCCc -3'
miRNA:   3'- uCUGCGGa------CUU-GGUGGGGCgCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 104146 0.73 0.423653
Target:  5'- cGACGCCaGuGGCCGCCCCGCcugggcGUCCa -3'
miRNA:   3'- uCUGCGGaC-UUGGUGGGGCGc-----UAGGa -5'
5496 5' -58.7 NC_001798.1 + 133473 0.72 0.441186
Target:  5'- cGACGcCCUGAgcggcuGCC-CCCCGCGcggGUCCg -3'
miRNA:   3'- uCUGC-GGACU------UGGuGGGGCGC---UAGGa -5'
5496 5' -58.7 NC_001798.1 + 86113 0.72 0.450105
Target:  5'- cGGACGCCc--GCCGCgCCGCGGUCa- -3'
miRNA:   3'- -UCUGCGGacuUGGUGgGGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 24603 0.72 0.459123
Target:  5'- uGGAgUGCCUGGccGCCugCCgCGgGAUCCUg -3'
miRNA:   3'- -UCU-GCGGACU--UGGugGG-GCgCUAGGA- -5'
5496 5' -58.7 NC_001798.1 + 149604 0.72 0.46732
Target:  5'- aAGGCGCCaGGGCCAcgacgcucgagacCCCCGCGAUg-- -3'
miRNA:   3'- -UCUGCGGaCUUGGU-------------GGGGCGCUAgga -5'
5496 5' -58.7 NC_001798.1 + 2451 0.72 0.486734
Target:  5'- cGGCGCC--AGCCGCCCUGCGggUCg -3'
miRNA:   3'- uCUGCGGacUUGGUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 143821 0.71 0.505571
Target:  5'- cGGCGCgcggccagccgUUGGACCACCCCGCccacaaaacGGUCCc -3'
miRNA:   3'- uCUGCG-----------GACUUGGUGGGGCG---------CUAGGa -5'
5496 5' -58.7 NC_001798.1 + 48106 0.71 0.505571
Target:  5'- cGGCGCCgUGGACC-CCCCGgGuggCCg -3'
miRNA:   3'- uCUGCGG-ACUUGGuGGGGCgCua-GGa -5'
5496 5' -58.7 NC_001798.1 + 143882 0.71 0.505571
Target:  5'- gGGACGCC---GCCGCCCCGCGcUUg- -3'
miRNA:   3'- -UCUGCGGacuUGGUGGGGCGCuAGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.