miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5496 5' -58.7 NC_001798.1 + 4745 0.71 0.515106
Target:  5'- cGGACGCCgGGGCCGCCUCGuCGGcaUCg- -3'
miRNA:   3'- -UCUGCGGaCUUGGUGGGGC-GCU--AGga -5'
5496 5' -58.7 NC_001798.1 + 154491 0.71 0.524714
Target:  5'- cGGGCGCCgccccuCC-CCCCGCGcgCCg -3'
miRNA:   3'- -UCUGCGGacuu--GGuGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 153 0.71 0.524714
Target:  5'- cGGGCGCCgccccuCC-CCCCGCGcgCCg -3'
miRNA:   3'- -UCUGCGGacuu--GGuGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 53983 0.71 0.534389
Target:  5'- cGACGuCCUGGGCCACCUgaCGCG--CCUg -3'
miRNA:   3'- uCUGC-GGACUUGGUGGG--GCGCuaGGA- -5'
5496 5' -58.7 NC_001798.1 + 74406 0.7 0.553921
Target:  5'- uGGCGCCggcGGACCugACCgCCGCGGcCCUg -3'
miRNA:   3'- uCUGCGGa--CUUGG--UGG-GGCGCUaGGA- -5'
5496 5' -58.7 NC_001798.1 + 64885 0.7 0.553921
Target:  5'- aAGugGCUgaagGGACgCGCCCCGCGAa--- -3'
miRNA:   3'- -UCugCGGa---CUUG-GUGGGGCGCUagga -5'
5496 5' -58.7 NC_001798.1 + 127346 0.7 0.573659
Target:  5'- cGA-GCCUGGGCguCCCCGUGAcCCg -3'
miRNA:   3'- uCUgCGGACUUGguGGGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 69301 0.7 0.583591
Target:  5'- gGGGCGCCgggGAcggucaGCCcUCCCGCGcgCCg -3'
miRNA:   3'- -UCUGCGGa--CU------UGGuGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 109629 0.7 0.593556
Target:  5'- -cGCGCU--AACCGCCCCGaUGGUCCg -3'
miRNA:   3'- ucUGCGGacUUGGUGGGGC-GCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 25087 0.7 0.603548
Target:  5'- aGGGCGCCgccGGGCggCGCCCCGCGccCCc -3'
miRNA:   3'- -UCUGCGGa--CUUG--GUGGGGCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 70737 0.69 0.613561
Target:  5'- cGGCGCCaaccuGACCACCCCgGCGuacagCCUg -3'
miRNA:   3'- uCUGCGGac---UUGGUGGGG-CGCua---GGA- -5'
5496 5' -58.7 NC_001798.1 + 145772 0.69 0.613561
Target:  5'- --cCGCCgc--CCACCCCGgGGUCCa -3'
miRNA:   3'- ucuGCGGacuuGGUGGGGCgCUAGGa -5'
5496 5' -58.7 NC_001798.1 + 52738 0.69 0.622585
Target:  5'- -cGCGCCgccgcggaacacgUGGACCuucGCCCCGCG-UCCUc -3'
miRNA:   3'- ucUGCGG-------------ACUUGG---UGGGGCGCuAGGA- -5'
5496 5' -58.7 NC_001798.1 + 43089 0.69 0.623587
Target:  5'- cGGGCGCCgccGCCGCgUCCGCGA-CCa -3'
miRNA:   3'- -UCUGCGGacuUGGUG-GGGCGCUaGGa -5'
5496 5' -58.7 NC_001798.1 + 122606 0.69 0.63362
Target:  5'- cGGGC-CCUGGGCCACUcuauccgggCCGCGcUCCa -3'
miRNA:   3'- -UCUGcGGACUUGGUGG---------GGCGCuAGGa -5'
5496 5' -58.7 NC_001798.1 + 149996 0.69 0.63362
Target:  5'- cGGACGCCggggcGAGCgGCCcguggCCGCGGUCg- -3'
miRNA:   3'- -UCUGCGGa----CUUGgUGG-----GGCGCUAGga -5'
5496 5' -58.7 NC_001798.1 + 135828 0.69 0.63362
Target:  5'- aGGACGCCUGuGACCGCUuuGUccugGAUgCCUu -3'
miRNA:   3'- -UCUGCGGAC-UUGGUGGggCG----CUA-GGA- -5'
5496 5' -58.7 NC_001798.1 + 37167 0.69 0.643651
Target:  5'- cGcCGCCUGGcggGCCGCUCgGCGcgCCa -3'
miRNA:   3'- uCuGCGGACU---UGGUGGGgCGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 43055 0.69 0.643651
Target:  5'- cGGCGCgUGAGCCGCCggCCgaGCGcgCCg -3'
miRNA:   3'- uCUGCGgACUUGGUGG--GG--CGCuaGGa -5'
5496 5' -58.7 NC_001798.1 + 3669 0.69 0.647662
Target:  5'- cGGGCGCCacgcgcggguucugGAGCCACCCCaucgccuccGCG-UCCg -3'
miRNA:   3'- -UCUGCGGa-------------CUUGGUGGGG---------CGCuAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.