miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5497 3' -59.5 NC_001798.1 + 98557 0.68 0.645477
Target:  5'- --cGCUGGUcGUgGGggcgCUGGuGGCCGCGg -3'
miRNA:   3'- ggaCGACCA-CGgCUa---GACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 100862 0.67 0.704478
Target:  5'- gCUGCUGGUccugGCCGGcCUGG--UCGCGg -3'
miRNA:   3'- gGACGACCA----CGGCUaGACCcuGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 104576 0.66 0.770568
Target:  5'- -gUGCUGGUGUCucggggaacGUCgcccGGGGCCGCc -3'
miRNA:   3'- ggACGACCACGGc--------UAGa---CCCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 109442 0.67 0.742771
Target:  5'- gCCUGCggcUGGagGCgCGccucgggcAUCUGGuGGCCGCGa -3'
miRNA:   3'- -GGACG---ACCa-CG-GC--------UAGACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 116242 0.69 0.625648
Target:  5'- cCCggcGCUGcUGCCGccccucGUgUGGGACUGCGa -3'
miRNA:   3'- -GGa--CGACcACGGC------UAgACCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 116499 0.74 0.339479
Target:  5'- aCgUGCUGGUGCCGGccuucUCgcgGGGgcgcugcugcACCGCGg -3'
miRNA:   3'- -GgACGACCACGGCU-----AGa--CCC----------UGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 123981 0.66 0.797322
Target:  5'- aCUGCUGG-GCCauggaugauGAcCUGGGGUCGCu -3'
miRNA:   3'- gGACGACCaCGG---------CUaGACCCUGGCGc -5'
5497 3' -59.5 NC_001798.1 + 127638 0.7 0.547049
Target:  5'- gCUGCUGGUGCUGGUCUc---CCGCc -3'
miRNA:   3'- gGACGACCACGGCUAGAcccuGGCGc -5'
5497 3' -59.5 NC_001798.1 + 128247 0.66 0.770568
Target:  5'- gCUGgaGGcgGCCGGcaugGuGGACCGCGg -3'
miRNA:   3'- gGACgaCCa-CGGCUaga-C-CCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 139039 0.67 0.752139
Target:  5'- aCCUGCgaaccaGCCGcugcggCUGGaGGCCGCGg -3'
miRNA:   3'- -GGACGacca--CGGCua----GACC-CUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 140196 0.67 0.723773
Target:  5'- gCCUGCg---GCCGGUgCUGGuGugCGUGg -3'
miRNA:   3'- -GGACGaccaCGGCUA-GACC-CugGCGC- -5'
5497 3' -59.5 NC_001798.1 + 149052 0.66 0.805112
Target:  5'- -aUGCUGGUguguguuGCUGuUC-GGGGCCGUGu -3'
miRNA:   3'- ggACGACCA-------CGGCuAGaCCCUGGCGC- -5'
5497 3' -59.5 NC_001798.1 + 150217 0.69 0.605838
Target:  5'- -gUGUUGGUGCCGcgg-GGGACCcCGg -3'
miRNA:   3'- ggACGACCACGGCuagaCCCUGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.