miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 3' -62.8 NC_001798.1 + 87984 0.67 0.545637
Target:  5'- gGACGCgCCUCCCgGgggGUCGGCaugcgaCGg -3'
miRNA:   3'- -CUGCGgGGAGGGaCa--CAGCCGgug---GC- -5'
5498 3' -62.8 NC_001798.1 + 88295 0.68 0.489773
Target:  5'- gGAUGUCCCUCuCCgg-GUCGGUgaugCGCCGa -3'
miRNA:   3'- -CUGCGGGGAG-GGacaCAGCCG----GUGGC- -5'
5498 3' -62.8 NC_001798.1 + 91839 0.66 0.613119
Target:  5'- -cCGCCCCUCCCagcacgccGUacauauacCGGCCGCCc -3'
miRNA:   3'- cuGCGGGGAGGGaca-----CA--------GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 92351 0.7 0.411467
Target:  5'- cGCGCCCCUCauc--GUCGGCCugACCGu -3'
miRNA:   3'- cUGCGGGGAGggacaCAGCCGG--UGGC- -5'
5498 3' -62.8 NC_001798.1 + 100401 0.66 0.603391
Target:  5'- cGACGCgCUCgagCCgUGcaccGUgGGCCACCGg -3'
miRNA:   3'- -CUGCG-GGGa--GGgACa---CAgCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 102339 0.7 0.411467
Target:  5'- cGAC-CCCCggaUCCC-GUGgucuccggCGGCCGCCGg -3'
miRNA:   3'- -CUGcGGGG---AGGGaCACa-------GCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 104653 0.67 0.574347
Target:  5'- gGugGCCagggCCCcGUGcucguagCGGCCGCCGg -3'
miRNA:   3'- -CugCGGgga-GGGaCACa------GCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 104981 0.66 0.603391
Target:  5'- uGCGCCCgUCUCgaaaGUCGGCgCugCGg -3'
miRNA:   3'- cUGCGGGgAGGGaca-CAGCCG-GugGC- -5'
5498 3' -62.8 NC_001798.1 + 109596 0.67 0.564733
Target:  5'- cGACGCCCUguacgCCgaGUuucUCGGCgGCCGc -3'
miRNA:   3'- -CUGCGGGGa----GGgaCAc--AGCCGgUGGC- -5'
5498 3' -62.8 NC_001798.1 + 111746 0.71 0.3414
Target:  5'- cGCGCCCCcggCCCcgGUccCGGCCAUCGg -3'
miRNA:   3'- cUGCGGGGa--GGGa-CAcaGCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 113507 0.69 0.436723
Target:  5'- --gGCCCUgugcgCCCUgGUGgCGGCCGCCc -3'
miRNA:   3'- cugCGGGGa----GGGA-CACaGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 115834 0.67 0.564733
Target:  5'- uGACGCCCggggCCUGgagcucggcGUUGGCCGCCa -3'
miRNA:   3'- -CUGCGGGgag-GGACa--------CAGCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 117456 0.66 0.640405
Target:  5'- cGGgGCCCCcCCgCUGcuagacaacgCGGCCGCCGu -3'
miRNA:   3'- -CUgCGGGGaGG-GACaca-------GCCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 121262 0.67 0.574347
Target:  5'- gGGgGUCCCgcuguccgCCCUcGUGcgCGGCCGCCc -3'
miRNA:   3'- -CUgCGGGGa-------GGGA-CACa-GCCGGUGGc -5'
5498 3' -62.8 NC_001798.1 + 128308 0.68 0.49891
Target:  5'- cGCGCCCC-CCC---GUCcGCCGCCGa -3'
miRNA:   3'- cUGCGGGGaGGGacaCAGcCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 134216 0.67 0.555161
Target:  5'- --aGCCCCUgggggacccgaCCCUGUGgCGGgCGCUGu -3'
miRNA:   3'- cugCGGGGA-----------GGGACACaGCCgGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 137361 0.76 0.167792
Target:  5'- cGACGCCCCagCCCUG-GUCcGGCgCACCc -3'
miRNA:   3'- -CUGCGGGGa-GGGACaCAG-CCG-GUGGc -5'
5498 3' -62.8 NC_001798.1 + 139334 0.68 0.508121
Target:  5'- cGGCGCCCgCgcgCgCUGUG-CGGCCAUgGc -3'
miRNA:   3'- -CUGCGGG-Ga--GgGACACaGCCGGUGgC- -5'
5498 3' -62.8 NC_001798.1 + 150158 0.68 0.49891
Target:  5'- cGCGCCUCUUCCgggGgcgGGCCGCCGc -3'
miRNA:   3'- cUGCGGGGAGGGacaCag-CCGGUGGC- -5'
5498 3' -62.8 NC_001798.1 + 154459 0.67 0.574347
Target:  5'- -cCGUCCCUCCCccgGaGcCGGCCGCUc -3'
miRNA:   3'- cuGCGGGGAGGGa--CaCaGCCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.