Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 32090 | 0.72 | 0.635444 |
Target: 5'- uCUCcGUCGuCCCAGGcCGCGGucGCCGc -3' miRNA: 3'- -GAGuCAGCuGGGUUC-GCGCCu-UGGCu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 147208 | 0.72 | 0.605051 |
Target: 5'- -gCGGUcCGGCCCGGGCccccgGCGGAGCgCGGg -3' miRNA: 3'- gaGUCA-GCUGGGUUCG-----CGCCUUG-GCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 3187 | 0.73 | 0.544976 |
Target: 5'- gUCGucGUCGGCCCcggccGGCGCGGAGgCGGg -3' miRNA: 3'- gAGU--CAGCUGGGu----UCGCGCCUUgGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 124562 | 0.73 | 0.544976 |
Target: 5'- gUCGGUCGAUCUcgggGAGgGCGGcACCGGg -3' miRNA: 3'- gAGUCAGCUGGG----UUCgCGCCuUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 44041 | 0.73 | 0.535131 |
Target: 5'- -cCGG-CGcccCCCAAGCGCGGAGCCu- -3' miRNA: 3'- gaGUCaGCu--GGGUUCGCGCCUUGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 70318 | 0.76 | 0.389117 |
Target: 5'- -gCGGUCGGCCCGgcggaGGCGCGGGcguGCUGGc -3' miRNA: 3'- gaGUCAGCUGGGU-----UCGCGCCU---UGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 57234 | 0.77 | 0.34146 |
Target: 5'- -cCAGUUGGCCCccGgGCGGGGCCGAc -3' miRNA: 3'- gaGUCAGCUGGGuuCgCGCCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 11742 | 0.79 | 0.278169 |
Target: 5'- -aCGcUCGAggguCCCAGGCGCGGGGCCGAa -3' miRNA: 3'- gaGUcAGCU----GGGUUCGCGCCUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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