miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 5' -56.2 NC_001798.1 + 153404 0.67 0.85074
Target:  5'- -gCGGUCGGCCCGcucGCGCGcccaGGACCc- -3'
miRNA:   3'- gaGUCAGCUGGGUu--CGCGC----CUUGGcu -5'
5498 5' -56.2 NC_001798.1 + 42758 0.67 0.85074
Target:  5'- -aCAGaCGGgCgGcGCGCGGGGCCGAc -3'
miRNA:   3'- gaGUCaGCUgGgUuCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 29922 0.68 0.842819
Target:  5'- -gCGGUgGGCUCGGGgGCGGGacgcuugacgggGCCGAc -3'
miRNA:   3'- gaGUCAgCUGGGUUCgCGCCU------------UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 137389 0.68 0.809329
Target:  5'- cCUCGG-CGuucuCCCGGGCGacCGGGAUCGGg -3'
miRNA:   3'- -GAGUCaGCu---GGGUUCGC--GCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 129678 0.68 0.809329
Target:  5'- --uGGUC-ACCCGGGCGCcGGGGCCc- -3'
miRNA:   3'- gagUCAGcUGGGUUCGCG-CCUUGGcu -5'
5498 5' -56.2 NC_001798.1 + 154162 0.69 0.791607
Target:  5'- gCUgGGcUCGGCgUAGGCcCGGAGCCGGa -3'
miRNA:   3'- -GAgUC-AGCUGgGUUCGcGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 2988 0.69 0.791607
Target:  5'- -gCGGcCGGCCCGcgggccccgGGCGCGGGggcgcggcggGCCGGg -3'
miRNA:   3'- gaGUCaGCUGGGU---------UCGCGCCU----------UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 84358 0.69 0.791607
Target:  5'- cCUC-GUCgGACCCAuccuGGcCGUGGAACUGGa -3'
miRNA:   3'- -GAGuCAG-CUGGGU----UC-GCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 153435 0.69 0.78253
Target:  5'- ---cGUCGGgCCAGGCGCGcGGCCGu -3'
miRNA:   3'- gaguCAGCUgGGUUCGCGCcUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 22148 0.69 0.78253
Target:  5'- -gCGGg-GGCCaacggGAGCGCGGGGCCGGc -3'
miRNA:   3'- gaGUCagCUGGg----UUCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 42876 0.69 0.773321
Target:  5'- --aAGU-GACCCAGGgccuCGUGGAGCCGGg -3'
miRNA:   3'- gagUCAgCUGGGUUC----GCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 57449 0.69 0.772393
Target:  5'- uUCGGg-GGCCCGgucuuggGGgGCGGGGCCGGu -3'
miRNA:   3'- gAGUCagCUGGGU-------UCgCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 109567 0.69 0.763048
Target:  5'- -gCGGUgGcCCCGAGCGCGGcccgccuGAUCGAc -3'
miRNA:   3'- gaGUCAgCuGGGUUCGCGCC-------UUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 153370 0.69 0.75454
Target:  5'- cCUCGGcCGcCgCCAcgcGGCGcCGGAACCGGu -3'
miRNA:   3'- -GAGUCaGCuG-GGU---UCGC-GCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 149727 0.7 0.744986
Target:  5'- cCUCGGcccccgCGGCgCAgcAGCGCGgGGGCCGAg -3'
miRNA:   3'- -GAGUCa-----GCUGgGU--UCGCGC-CUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 151211 0.7 0.715778
Target:  5'- -cCAG-CGACaggGAGCGCGGGGCCGu -3'
miRNA:   3'- gaGUCaGCUGgg-UUCGCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 32572 0.71 0.655706
Target:  5'- -gCGGgccgCGGCCCccGCGUGGAGCCGc -3'
miRNA:   3'- gaGUCa---GCUGGGuuCGCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 80380 0.71 0.655706
Target:  5'- gCUCAGUcCGGCCCAGGCccugGCGGcGgUGAg -3'
miRNA:   3'- -GAGUCA-GCUGGGUUCG----CGCCuUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 77351 0.71 0.655706
Target:  5'- aCUCGGcUGGCCCuggAGGCGCGGGggGCCa- -3'
miRNA:   3'- -GAGUCaGCUGGG---UUCGCGCCU--UGGcu -5'
5498 5' -56.2 NC_001798.1 + 32090 0.72 0.635444
Target:  5'- uCUCcGUCGuCCCAGGcCGCGGucGCCGc -3'
miRNA:   3'- -GAGuCAGCuGGGUUC-GCGCCu-UGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.