Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 154162 | 0.69 | 0.791607 |
Target: 5'- gCUgGGcUCGGCgUAGGCcCGGAGCCGGa -3' miRNA: 3'- -GAgUC-AGCUGgGUUCGcGCCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 2988 | 0.69 | 0.791607 |
Target: 5'- -gCGGcCGGCCCGcgggccccgGGCGCGGGggcgcggcggGCCGGg -3' miRNA: 3'- gaGUCaGCUGGGU---------UCGCGCCU----------UGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 84358 | 0.69 | 0.791607 |
Target: 5'- cCUC-GUCgGACCCAuccuGGcCGUGGAACUGGa -3' miRNA: 3'- -GAGuCAG-CUGGGU----UC-GCGCCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 137389 | 0.68 | 0.809329 |
Target: 5'- cCUCGG-CGuucuCCCGGGCGacCGGGAUCGGg -3' miRNA: 3'- -GAGUCaGCu---GGGUUCGC--GCCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 129678 | 0.68 | 0.809329 |
Target: 5'- --uGGUC-ACCCGGGCGCcGGGGCCc- -3' miRNA: 3'- gagUCAGcUGGGUUCGCG-CCUUGGcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 29922 | 0.68 | 0.842819 |
Target: 5'- -gCGGUgGGCUCGGGgGCGGGacgcuugacgggGCCGAc -3' miRNA: 3'- gaGUCAgCUGGGUUCgCGCCU------------UGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 42758 | 0.67 | 0.85074 |
Target: 5'- -aCAGaCGGgCgGcGCGCGGGGCCGAc -3' miRNA: 3'- gaGUCaGCUgGgUuCGCGCCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 153404 | 0.67 | 0.85074 |
Target: 5'- -gCGGUCGGCCCGcucGCGCGcccaGGACCc- -3' miRNA: 3'- gaGUCAGCUGGGUu--CGCGC----CUUGGcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 97576 | 0.67 | 0.858466 |
Target: 5'- -aCGGggagcgCGGCCCcgagccagGGGCGCaGGGGCCGGa -3' miRNA: 3'- gaGUCa-----GCUGGG--------UUCGCG-CCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 66885 | 0.67 | 0.873311 |
Target: 5'- gCUUGGgaaaGGCCaCGGGgGCGGGGCCGu -3' miRNA: 3'- -GAGUCag--CUGG-GUUCgCGCCUUGGCu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 77259 | 0.67 | 0.880418 |
Target: 5'- ---uGUCGGCCCuGGGCGCGGccGCCc- -3' miRNA: 3'- gaguCAGCUGGG-UUCGCGCCu-UGGcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 103048 | 0.66 | 0.893977 |
Target: 5'- cCUCGcGUCGcACCCccucGCGCGucGCCGGg -3' miRNA: 3'- -GAGU-CAGC-UGGGuu--CGCGCcuUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 132130 | 0.66 | 0.893977 |
Target: 5'- -gCAGgCGGCCCu-GCGCcgccgGGGGCCGGc -3' miRNA: 3'- gaGUCaGCUGGGuuCGCG-----CCUUGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 115539 | 0.66 | 0.893977 |
Target: 5'- -cCGGcCGGCCCcGGCGCGGAcauGCa-- -3' miRNA: 3'- gaGUCaGCUGGGuUCGCGCCU---UGgcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 24567 | 0.66 | 0.893977 |
Target: 5'- -gCGG-CGGCCgGcGCGCGGAGgCGGg -3' miRNA: 3'- gaGUCaGCUGGgUuCGCGCCUUgGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 78833 | 0.66 | 0.900422 |
Target: 5'- -aCGGcccCGGCCCcuGGCGCGGcacGCCGGc -3' miRNA: 3'- gaGUCa--GCUGGGu-UCGCGCCu--UGGCU- -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 111413 | 0.66 | 0.906027 |
Target: 5'- gCUCAGggccagcgCGGcCCCGAGaaacgccCGCGGAGCCc- -3' miRNA: 3'- -GAGUCa-------GCU-GGGUUC-------GCGCCUUGGcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 150040 | 0.66 | 0.906638 |
Target: 5'- --gAGUCcggGGCCC-GGCGCGGcGCCGc -3' miRNA: 3'- gagUCAG---CUGGGuUCGCGCCuUGGCu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 108279 | 0.66 | 0.906638 |
Target: 5'- -cCAG-CGACCCccAGCGCGGAcgcuuggcGCCc- -3' miRNA: 3'- gaGUCaGCUGGGu-UCGCGCCU--------UGGcu -5' |
|||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 34834 | 0.66 | 0.906638 |
Target: 5'- -cCGGg-GGCCCGGGC-CGGAccGCCGGg -3' miRNA: 3'- gaGUCagCUGGGUUCGcGCCU--UGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home