miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 5' -56.2 NC_001798.1 + 11742 0.79 0.278169
Target:  5'- -aCGcUCGAggguCCCAGGCGCGGGGCCGAa -3'
miRNA:   3'- gaGUcAGCU----GGGUUCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 57234 0.77 0.34146
Target:  5'- -cCAGUUGGCCCccGgGCGGGGCCGAc -3'
miRNA:   3'- gaGUCAGCUGGGuuCgCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 70318 0.76 0.389117
Target:  5'- -gCGGUCGGCCCGgcggaGGCGCGGGcguGCUGGc -3'
miRNA:   3'- gaGUCAGCUGGGU-----UCGCGCCU---UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 44041 0.73 0.535131
Target:  5'- -cCGG-CGcccCCCAAGCGCGGAGCCu- -3'
miRNA:   3'- gaGUCaGCu--GGGUUCGCGCCUUGGcu -5'
5498 5' -56.2 NC_001798.1 + 124562 0.73 0.544976
Target:  5'- gUCGGUCGAUCUcgggGAGgGCGGcACCGGg -3'
miRNA:   3'- gAGUCAGCUGGG----UUCgCGCCuUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 3187 0.73 0.544976
Target:  5'- gUCGucGUCGGCCCcggccGGCGCGGAGgCGGg -3'
miRNA:   3'- gAGU--CAGCUGGGu----UCGCGCCUUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 147208 0.72 0.605051
Target:  5'- -gCGGUcCGGCCCGGGCccccgGCGGAGCgCGGg -3'
miRNA:   3'- gaGUCA-GCUGGGUUCG-----CGCCUUG-GCU- -5'
5498 5' -56.2 NC_001798.1 + 32090 0.72 0.635444
Target:  5'- uCUCcGUCGuCCCAGGcCGCGGucGCCGc -3'
miRNA:   3'- -GAGuCAGCuGGGUUC-GCGCCu-UGGCu -5'
5498 5' -56.2 NC_001798.1 + 62349 0.72 0.635444
Target:  5'- -cCGGUCGGCCuCGAGaCGCGcaucucguGGACCGAa -3'
miRNA:   3'- gaGUCAGCUGG-GUUC-GCGC--------CUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 80380 0.71 0.655706
Target:  5'- gCUCAGUcCGGCCCAGGCccugGCGGcGgUGAg -3'
miRNA:   3'- -GAGUCA-GCUGGGUUCG----CGCCuUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 77351 0.71 0.655706
Target:  5'- aCUCGGcUGGCCCuggAGGCGCGGGggGCCa- -3'
miRNA:   3'- -GAGUCaGCUGGG---UUCGCGCCU--UGGcu -5'
5498 5' -56.2 NC_001798.1 + 32572 0.71 0.655706
Target:  5'- -gCGGgccgCGGCCCccGCGUGGAGCCGc -3'
miRNA:   3'- gaGUCa---GCUGGGuuCGCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 151211 0.7 0.715778
Target:  5'- -cCAG-CGACaggGAGCGCGGGGCCGu -3'
miRNA:   3'- gaGUCaGCUGgg-UUCGCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 149727 0.7 0.744986
Target:  5'- cCUCGGcccccgCGGCgCAgcAGCGCGgGGGCCGAg -3'
miRNA:   3'- -GAGUCa-----GCUGgGU--UCGCGC-CUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 153370 0.69 0.75454
Target:  5'- cCUCGGcCGcCgCCAcgcGGCGcCGGAACCGGu -3'
miRNA:   3'- -GAGUCaGCuG-GGU---UCGC-GCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 109567 0.69 0.763048
Target:  5'- -gCGGUgGcCCCGAGCGCGGcccgccuGAUCGAc -3'
miRNA:   3'- gaGUCAgCuGGGUUCGCGCC-------UUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 57449 0.69 0.772393
Target:  5'- uUCGGg-GGCCCGgucuuggGGgGCGGGGCCGGu -3'
miRNA:   3'- gAGUCagCUGGGU-------UCgCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 42876 0.69 0.773321
Target:  5'- --aAGU-GACCCAGGgccuCGUGGAGCCGGg -3'
miRNA:   3'- gagUCAgCUGGGUUC----GCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 153435 0.69 0.78253
Target:  5'- ---cGUCGGgCCAGGCGCGcGGCCGu -3'
miRNA:   3'- gaguCAGCUgGGUUCGCGCcUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 22148 0.69 0.78253
Target:  5'- -gCGGg-GGCCaacggGAGCGCGGGGCCGGc -3'
miRNA:   3'- gaGUCagCUGGg----UUCGCGCCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.