miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5498 5' -56.2 NC_001798.1 + 2988 0.69 0.791607
Target:  5'- -gCGGcCGGCCCGcgggccccgGGCGCGGGggcgcggcggGCCGGg -3'
miRNA:   3'- gaGUCaGCUGGGU---------UCGCGCCU----------UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 3187 0.73 0.544976
Target:  5'- gUCGucGUCGGCCCcggccGGCGCGGAGgCGGg -3'
miRNA:   3'- gAGU--CAGCUGGGu----UCGCGCCUUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 3879 0.66 0.912624
Target:  5'- -aCAGcacgCGcCCCGGGgGCGGGggGCCGGc -3'
miRNA:   3'- gaGUCa---GCuGGGUUCgCGCCU--UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 11742 0.79 0.278169
Target:  5'- -aCGcUCGAggguCCCAGGCGCGGGGCCGAa -3'
miRNA:   3'- gaGUcAGCU----GGGUUCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 15840 0.66 0.912624
Target:  5'- uUCGGggGGCCCGAaCGuCGGggUCGAc -3'
miRNA:   3'- gAGUCagCUGGGUUcGC-GCCuuGGCU- -5'
5498 5' -56.2 NC_001798.1 + 22148 0.69 0.78253
Target:  5'- -gCGGg-GGCCaacggGAGCGCGGGGCCGGc -3'
miRNA:   3'- gaGUCagCUGGg----UUCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 24567 0.66 0.893977
Target:  5'- -gCGG-CGGCCgGcGCGCGGAGgCGGg -3'
miRNA:   3'- gaGUCaGCUGGgUuCGCGCCUUgGCU- -5'
5498 5' -56.2 NC_001798.1 + 27106 0.66 0.923897
Target:  5'- gUCAGgUGGCCCGAGCccccccGCaGGAGCgGGa -3'
miRNA:   3'- gAGUCaGCUGGGUUCG------CG-CCUUGgCU- -5'
5498 5' -56.2 NC_001798.1 + 29922 0.68 0.842819
Target:  5'- -gCGGUgGGCUCGGGgGCGGGacgcuugacgggGCCGAc -3'
miRNA:   3'- gaGUCAgCUGGGUUCgCGCCU------------UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 32090 0.72 0.635444
Target:  5'- uCUCcGUCGuCCCAGGcCGCGGucGCCGc -3'
miRNA:   3'- -GAGuCAGCuGGGUUC-GCGCCu-UGGCu -5'
5498 5' -56.2 NC_001798.1 + 32295 0.66 0.923897
Target:  5'- cCUCccUCGGCCCccGCGCugcugcgccgcgGGGGCCGAg -3'
miRNA:   3'- -GAGucAGCUGGGuuCGCG------------CCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 32572 0.71 0.655706
Target:  5'- -gCGGgccgCGGCCCccGCGUGGAGCCGc -3'
miRNA:   3'- gaGUCa---GCUGGGuuCGCGCCUUGGCu -5'
5498 5' -56.2 NC_001798.1 + 34834 0.66 0.906638
Target:  5'- -cCGGg-GGCCCGGGC-CGGAccGCCGGg -3'
miRNA:   3'- gaGUCagCUGGGUUCGcGCCU--UGGCU- -5'
5498 5' -56.2 NC_001798.1 + 42758 0.67 0.85074
Target:  5'- -aCAGaCGGgCgGcGCGCGGGGCCGAc -3'
miRNA:   3'- gaGUCaGCUgGgUuCGCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 42876 0.69 0.773321
Target:  5'- --aAGU-GACCCAGGgccuCGUGGAGCCGGg -3'
miRNA:   3'- gagUCAgCUGGGUUC----GCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 44041 0.73 0.535131
Target:  5'- -cCGG-CGcccCCCAAGCGCGGAGCCu- -3'
miRNA:   3'- gaGUCaGCu--GGGUUCGCGCCUUGGcu -5'
5498 5' -56.2 NC_001798.1 + 57234 0.77 0.34146
Target:  5'- -cCAGUUGGCCCccGgGCGGGGCCGAc -3'
miRNA:   3'- gaGUCAGCUGGGuuCgCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 57449 0.69 0.772393
Target:  5'- uUCGGg-GGCCCGgucuuggGGgGCGGGGCCGGu -3'
miRNA:   3'- gAGUCagCUGGGU-------UCgCGCCUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 62349 0.72 0.635444
Target:  5'- -cCGGUCGGCCuCGAGaCGCGcaucucguGGACCGAa -3'
miRNA:   3'- gaGUCAGCUGG-GUUC-GCGC--------CUUGGCU- -5'
5498 5' -56.2 NC_001798.1 + 66795 0.66 0.918378
Target:  5'- --gAGUCGGCCgAcgcGCGCGGGuCCGu -3'
miRNA:   3'- gagUCAGCUGGgUu--CGCGCCUuGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.