Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5498 | 5' | -56.2 | NC_001798.1 | + | 154162 | 0.69 | 0.791607 |
Target: 5'- gCUgGGcUCGGCgUAGGCcCGGAGCCGGa -3' miRNA: 3'- -GAgUC-AGCUGgGUUCGcGCCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 153435 | 0.69 | 0.78253 |
Target: 5'- ---cGUCGGgCCAGGCGCGcGGCCGu -3' miRNA: 3'- gaguCAGCUgGGUUCGCGCcUUGGCu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 153404 | 0.67 | 0.85074 |
Target: 5'- -gCGGUCGGCCCGcucGCGCGcccaGGACCc- -3' miRNA: 3'- gaGUCAGCUGGGUu--CGCGC----CUUGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 153370 | 0.69 | 0.75454 |
Target: 5'- cCUCGGcCGcCgCCAcgcGGCGcCGGAACCGGu -3' miRNA: 3'- -GAGUCaGCuG-GGU---UCGC-GCCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 151211 | 0.7 | 0.715778 |
Target: 5'- -cCAG-CGACaggGAGCGCGGGGCCGu -3' miRNA: 3'- gaGUCaGCUGgg-UUCGCGCCUUGGCu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 150040 | 0.66 | 0.906638 |
Target: 5'- --gAGUCcggGGCCC-GGCGCGGcGCCGc -3' miRNA: 3'- gagUCAG---CUGGGuUCGCGCCuUGGCu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 149727 | 0.7 | 0.744986 |
Target: 5'- cCUCGGcccccgCGGCgCAgcAGCGCGgGGGCCGAg -3' miRNA: 3'- -GAGUCa-----GCUGgGU--UCGCGC-CUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 147208 | 0.72 | 0.605051 |
Target: 5'- -gCGGUcCGGCCCGGGCccccgGCGGAGCgCGGg -3' miRNA: 3'- gaGUCA-GCUGGGUUCG-----CGCCUUG-GCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 137389 | 0.68 | 0.809329 |
Target: 5'- cCUCGG-CGuucuCCCGGGCGacCGGGAUCGGg -3' miRNA: 3'- -GAGUCaGCu---GGGUUCGC--GCCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 134419 | 0.66 | 0.920614 |
Target: 5'- gUCGacGUCGACCCGcuggcccuguccgcGCGCGucGCCGAg -3' miRNA: 3'- gAGU--CAGCUGGGUu-------------CGCGCcuUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 132130 | 0.66 | 0.893977 |
Target: 5'- -gCAGgCGGCCCu-GCGCcgccgGGGGCCGGc -3' miRNA: 3'- gaGUCaGCUGGGuuCGCG-----CCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 129678 | 0.68 | 0.809329 |
Target: 5'- --uGGUC-ACCCGGGCGCcGGGGCCc- -3' miRNA: 3'- gagUCAGcUGGGUUCGCG-CCUUGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 124562 | 0.73 | 0.544976 |
Target: 5'- gUCGGUCGAUCUcgggGAGgGCGGcACCGGg -3' miRNA: 3'- gAGUCAGCUGGG----UUCgCGCCuUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 115539 | 0.66 | 0.893977 |
Target: 5'- -cCGGcCGGCCCcGGCGCGGAcauGCa-- -3' miRNA: 3'- gaGUCaGCUGGGuUCGCGCCU---UGgcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 111413 | 0.66 | 0.906027 |
Target: 5'- gCUCAGggccagcgCGGcCCCGAGaaacgccCGCGGAGCCc- -3' miRNA: 3'- -GAGUCa-------GCU-GGGUUC-------GCGCCUUGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 109567 | 0.69 | 0.763048 |
Target: 5'- -gCGGUgGcCCCGAGCGCGGcccgccuGAUCGAc -3' miRNA: 3'- gaGUCAgCuGGGUUCGCGCC-------UUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 108279 | 0.66 | 0.906638 |
Target: 5'- -cCAG-CGACCCccAGCGCGGAcgcuuggcGCCc- -3' miRNA: 3'- gaGUCaGCUGGGu-UCGCGCCU--------UGGcu -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 103048 | 0.66 | 0.893977 |
Target: 5'- cCUCGcGUCGcACCCccucGCGCGucGCCGGg -3' miRNA: 3'- -GAGU-CAGC-UGGGuu--CGCGCcuUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 97576 | 0.67 | 0.858466 |
Target: 5'- -aCGGggagcgCGGCCCcgagccagGGGCGCaGGGGCCGGa -3' miRNA: 3'- gaGUCa-----GCUGGG--------UUCGCG-CCUUGGCU- -5' |
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5498 | 5' | -56.2 | NC_001798.1 | + | 84358 | 0.69 | 0.791607 |
Target: 5'- cCUC-GUCgGACCCAuccuGGcCGUGGAACUGGa -3' miRNA: 3'- -GAGuCAG-CUGGGU----UC-GCGCCUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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