miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5499 3' -56 NC_001798.1 + 20179 0.67 0.864385
Target:  5'- gCACACGGGCUcgGCGGCGGguucaaaaugCGCCu-- -3'
miRNA:   3'- gGUGUGUUCGG--CGUUGCCa---------GCGGcaa -5'
5499 3' -56 NC_001798.1 + 25107 0.67 0.856745
Target:  5'- cCCGCGCcccccgaagaaGAGCCGCG-CGGaCGCCc-- -3'
miRNA:   3'- -GGUGUG-----------UUCGGCGUuGCCaGCGGcaa -5'
5499 3' -56 NC_001798.1 + 43245 0.67 0.856745
Target:  5'- cCUGCAUgaGAGCCGCGAucgcCGGgggCGUCGUg -3'
miRNA:   3'- -GGUGUG--UUCGGCGUU----GCCa--GCGGCAa -5'
5499 3' -56 NC_001798.1 + 133494 0.67 0.856745
Target:  5'- cCCGCGCGGGuCCGUgagcgaGACGGagcacgcgcugUCGCUGUUc -3'
miRNA:   3'- -GGUGUGUUC-GGCG------UUGCC-----------AGCGGCAA- -5'
5499 3' -56 NC_001798.1 + 137929 0.67 0.856745
Target:  5'- cCCGCGCcucccccGGCCGCc-CGGUCcGCCGc- -3'
miRNA:   3'- -GGUGUGu------UCGGCGuuGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 153035 0.67 0.856745
Target:  5'- cCCGCGC-GGCgGCGcGCGGUUgGCCGg- -3'
miRNA:   3'- -GGUGUGuUCGgCGU-UGCCAG-CGGCaa -5'
5499 3' -56 NC_001798.1 + 97673 0.67 0.855969
Target:  5'- gUACGCGGaCCGCcugaccaAGCGGUCGCUGg- -3'
miRNA:   3'- gGUGUGUUcGGCG-------UUGCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 3140 0.67 0.853632
Target:  5'- uCCGCGCGccGGCCGCcgccaccaccgcCGG-CGCCGUc -3'
miRNA:   3'- -GGUGUGU--UCGGCGuu----------GCCaGCGGCAa -5'
5499 3' -56 NC_001798.1 + 22288 0.67 0.848901
Target:  5'- gCCGCGCGGGCggaGCGGCGG-CGgCGc- -3'
miRNA:   3'- -GGUGUGUUCGg--CGUUGCCaGCgGCaa -5'
5499 3' -56 NC_001798.1 + 34955 0.67 0.848901
Target:  5'- aCGCGCGGcGCCGgAggggGCGGcCGCCGa- -3'
miRNA:   3'- gGUGUGUU-CGGCgU----UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 52503 0.67 0.848901
Target:  5'- cCgGCGCAGGgacgaCGCGGCGGccgcgcgCGCCGUg -3'
miRNA:   3'- -GgUGUGUUCg----GCGUUGCCa------GCGGCAa -5'
5499 3' -56 NC_001798.1 + 83336 0.67 0.848901
Target:  5'- gCCGCAgcCAuucGGCCGCGGCG-UCGCCc-- -3'
miRNA:   3'- -GGUGU--GU---UCGGCGUUGCcAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 115600 0.67 0.848901
Target:  5'- cCCACGgcCGGGuCCG-GugGGUCGCCGa- -3'
miRNA:   3'- -GGUGU--GUUC-GGCgUugCCAGCGGCaa -5'
5499 3' -56 NC_001798.1 + 71577 0.67 0.848106
Target:  5'- aCGCACGGGCgGCucugugaGGCGGUCgGCCu-- -3'
miRNA:   3'- gGUGUGUUCGgCG-------UUGCCAG-CGGcaa -5'
5499 3' -56 NC_001798.1 + 28075 0.68 0.840862
Target:  5'- gCGCGCcGGCCGCGuccucgcuccuGCGG-CGCUGg- -3'
miRNA:   3'- gGUGUGuUCGGCGU-----------UGCCaGCGGCaa -5'
5499 3' -56 NC_001798.1 + 104429 0.68 0.840862
Target:  5'- -aGCACGgccagGGCCGUAaugguguugGCGGUCGCCc-- -3'
miRNA:   3'- ggUGUGU-----UCGGCGU---------UGCCAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 140185 0.68 0.840862
Target:  5'- gUACGCGGGCCGCcuGCGGccggUGCUGg- -3'
miRNA:   3'- gGUGUGUUCGGCGu-UGCCa---GCGGCaa -5'
5499 3' -56 NC_001798.1 + 32307 0.68 0.832632
Target:  5'- cCCGCGCu-GCUGCGccGCGGggGCCGa- -3'
miRNA:   3'- -GGUGUGuuCGGCGU--UGCCagCGGCaa -5'
5499 3' -56 NC_001798.1 + 144667 0.68 0.832632
Target:  5'- gUugGCAGGCCGUAAauCGcGUCGCCc-- -3'
miRNA:   3'- gGugUGUUCGGCGUU--GC-CAGCGGcaa -5'
5499 3' -56 NC_001798.1 + 47064 0.68 0.832632
Target:  5'- aCGCGCAAuGCCGgGGCGacagCGCCGg- -3'
miRNA:   3'- gGUGUGUU-CGGCgUUGCca--GCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.